These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence [GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTAACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAGGTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTATGAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCTACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAACGAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCACNTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGGCAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGNTGGTCGTGTGTGTTNATGTGCAAGNCAACTAAGCTCTTAAN] [+] EMBL BX467941 [GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTAACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAGGTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTATGAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCTACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAACGAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCACNTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGGCAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGNTGGTCGTGTGTGTTNATGTGCAAGNCAACTAAGCTCTTAAN] consensusID : consensus_302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTTAAAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAACAAACCGAAATGCATCTACAGTGTGCAAATACGAATGGAGCGTGAGTGGTGGGTTTAGTATAAACAACAACAACAAAACGAAGAAGGAAAGTAAACAAAACCAGACAATGGTAGGCAACACACACATTAAGATAATAAGTGCACACTTGATGGATTAATCTTATCATGGCAGCAGCAGCTAGAACTACAAACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTTAATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTGATAAGCGA] [+] EMBL BM644184 [CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTTAAAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAACAAACCGAAATGCATCTACAGTGTGCAAATACGAATGGAGCGTGAGTGGTGGGTTTAGTATAAACAACAACAACAAAACGAAGAAGGAAAGTAAACAAAACCAGACAATGGTAGGCAACACACACATTAAGATAATAAGTGCACACTTGATGGATTAATCTTATCATGGCAGCAGCAGCTAGAACTACAAACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTTAATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTGATAAGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_302#0 GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTA 60 consensus_302#1 ------------------------------------------------------------ consensus_302#0 ACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAG 120 consensus_302#1 ------------------------------------------------------------ consensus_302#0 GTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTAT 180 consensus_302#1 ------------------------------------------------------------ consensus_302#0 GAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA 240 consensus_302#1 CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA 60 ********************************************************* consensus_302#0 GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA 300 consensus_302#1 GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA 120 ************************************************************ consensus_302#0 AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA 360 consensus_302#1 AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA 180 ************************************************************ consensus_302#0 GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAA 420 consensus_302#1 GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTT--AAAAACAAAGCAAGAA 238 ***************************************** * ************** consensus_302#0 AACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCT 480 consensus_302#1 AACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAA-CAAACCGAAATGCATCT 297 ****************************************** ***************** consensus_302#0 ACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAAC 540 consensus_302#1 ACAGTGTGCAAATACG-AATGGAGCGTGAGTGGTGGGTTTAGTATAAAC--AACAACAAC 354 **************** ******************************* * ******* consensus_302#0 GAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCAC 600 consensus_302#1 -AAAACGAAGAAGGAAAGTAA---ACAAAACCAG-ACAAT--GGTAGGCAAC-ACA-CAC 405 ******************** * ** ***** **** ********** *** *** consensus_302#0 NTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGG 660 consensus_302#1 ATTAA-GATAA--TAAGTGCACA-CTTG-ATGGATT-AATCTTATCATGGCAGCAGCAGC 459 ** * *** * ********** **** ******* * ********* * ****** consensus_302#0 CAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGN-TGGTCGTGTGTGTT 719 consensus_302#1 TAGAACTACA-AACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTT 518 * ** *** * * * * * ** ** * * * ** consensus_302#0 NATG---TGCAAGNCAACTAAGCTCTTAAN------------------------------ 746 consensus_302#1 AATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTG 578 ** ***** * **** ** consensus_302#0 -------- consensus_302#1 ATAAGCGA 586 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||