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Anopheles gambiae
cluster # 302 cluster # 302       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_302#0 length = 746 sequences # 1  
consensus_302#1 length = 586 sequences # 1  

consensusID : consensus_302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 746
fasta sequence
                              [GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTAACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAGGTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTATGAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCTACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAACGAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCACNTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGGCAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGNTGGTCGTGTGTGTTNATGTGCAAGNCAACTAAGCTCTTAAN]

[+] EMBL BX467941             [GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTAACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAGGTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTATGAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCTACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAACGAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCACNTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGGCAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGNTGGTCGTGTGTGTTNATGTGCAAGNCAACTAAGCTCTTAAN]


>consensus_302#0 GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTA ACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAG GTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTAT GAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAA AACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCT ACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAAC GAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCAC NTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGG CAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGNTGGTCGTGTGTGTTN ATGTGCAAGNCAACTAAGCTCTTAAN



consensusID : consensus_302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTTAAAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAACAAACCGAAATGCATCTACAGTGTGCAAATACGAATGGAGCGTGAGTGGTGGGTTTAGTATAAACAACAACAACAAAACGAAGAAGGAAAGTAAACAAAACCAGACAATGGTAGGCAACACACACATTAAGATAATAAGTGCACACTTGATGGATTAATCTTATCATGGCAGCAGCAGCTAGAACTACAAACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTTAATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTGATAAGCGA]

[+] EMBL BM644184             [CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTTAAAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAACAAACCGAAATGCATCTACAGTGTGCAAATACGAATGGAGCGTGAGTGGTGGGTTTAGTATAAACAACAACAACAAAACGAAGAAGGAAAGTAAACAAAACCAGACAATGGTAGGCAACACACACATTAAGATAATAAGTGCACACTTGATGGATTAATCTTATCATGGCAGCAGCAGCTAGAACTACAAACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTTAATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTGATAAGCGA]


>consensus_302#1 CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTTAAAAACAAAGCAAGAAAA CAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAACAAACCGAAATGCATCTACA GTGTGCAAATACGAATGGAGCGTGAGTGGTGGGTTTAGTATAAACAACAACAACAAAACG AAGAAGGAAAGTAAACAAAACCAGACAATGGTAGGCAACACACACATTAAGATAATAAGT GCACACTTGATGGATTAATCTTATCATGGCAGCAGCAGCTAGAACTACAAACAATATAGC AGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTTAATACACTGCAATGAGGCAAAG CAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTGATAAGCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_302#0      GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTA 60
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      ACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAG 120
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      GTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTAT 180
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      GAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA 240
consensus_302#1      CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA 60
                        *********************************************************

consensus_302#0      GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA 300
consensus_302#1      GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA 120
                     ************************************************************

consensus_302#0      AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA 360
consensus_302#1      AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA 180
                     ************************************************************

consensus_302#0      GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAA 420
consensus_302#1      GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTT--AAAAACAAAGCAAGAA 238
                     *****************************************   * **************

consensus_302#0      AACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCT 480
consensus_302#1      AACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAA-CAAACCGAAATGCATCT 297
                     ****************************************** *****************

consensus_302#0      ACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAAC 540
consensus_302#1      ACAGTGTGCAAATACG-AATGGAGCGTGAGTGGTGGGTTTAGTATAAAC--AACAACAAC 354
                     **************** *******************************   * *******

consensus_302#0      GAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCAC 600
consensus_302#1      -AAAACGAAGAAGGAAAGTAA---ACAAAACCAG-ACAAT--GGTAGGCAAC-ACA-CAC 405
                      ********************   * ** ***** ****   ********** *** ***

consensus_302#0      NTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGG 660
consensus_302#1      ATTAA-GATAA--TAAGTGCACA-CTTG-ATGGATT-AATCTTATCATGGCAGCAGCAGC 459
                      ** * *** *  ********** **** ******* * ********* *   ****** 

consensus_302#0      CAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGN-TGGTCGTGTGTGTT 719
consensus_302#1      TAGAACTACA-AACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTT 518
                      *    **   *** *   * *    * *        **   **    *   *   * **

consensus_302#0      NATG---TGCAAGNCAACTAAGCTCTTAAN------------------------------ 746
consensus_302#1      AATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTG 578
                      **    *****     * ****    **                               

consensus_302#0      --------
consensus_302#1      ATAAGCGA 586
                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)