cluster # 3020

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Anopheles gambiae
cluster # 3020 cluster # 3020 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3020#0 length = 626 sequences # 1

consensus_3020#1 length = 416 sequences # 1

consensusID : consensus_3020#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CCGCGGACGCGTGGGACACAGTGGTAAAGCGCATGTCTCGTGTATAGAGAGTAAAGCAGCGTTAAAGAGCGTTGCTTCATTTAGTAACATTAGTAGCAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATATTATTAGATGCATAAACACACACACACATACCAGTACCGAGGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACTCACTCAACTCGTAACCACGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACGCAATAGTACACAGAAACAGAATATACATTCGATAGGAAACGGATGGATTTTGTTGTTGAACAAATACACACCAACATAACAGTATAGAAATAGATATATATCAATGCGATAGAAACCTCATCTGTGGAGAAAGCAAAATGACAGAAACAATAGTAGTAAATGAAATTGAATACACCAATACGAAGGAACTCCTCGTGCTCG]

[+] EMBL BM607384             [CCGCGGACGCGTGGGACACAGTGGTAAAGCGCATGTCTCGTGTATAGAGAGTAAAGCAGCGTTAAAGAGCGTTGCTTCATTTAGTAACATTAGTAGCAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATATTATTAGATGCATAAACACACACACACATACCAGTACCGAGGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACTCACTCAACTCGTAACCACGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACGCAATAGTACACAGAAACAGAATATACATTCGATAGGAAACGGATGGATTTTGTTGTTGAACAAATACACACCAACATAACAGTATAGAAATAGATATATATCAATGCGATAGAAACCTCATCTGTGGAGAAAGCAAAATGACAGAAACAATAGTAGTAAATGAAATTGAATACACCAATACGAAGGAACTCCTCGTGCTCG]




>consensus_3020#0
CCGCGGACGCGTGGGACACAGTGGTAAAGCGCATGTCTCGTGTATAGAGAGTAAAGCAGC
GTTAAAGAGCGTTGCTTCATTTAGTAACATTAGTAGCAGTAGTAGTAGTAGTAGTAGTTT
AATGGAAAGAGGTATAGCAAAACTATATTATTAGATGCATAAACACACACACACATACCA
GTACCGAGGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGTACG
TACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGC
GCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACTCACTCAACTCGTAACC
ACGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTG
AAACGCAATAGTACACAGAAACAGAATATACATTCGATAGGAAACGGATGGATTTTGTTG
TTGAACAAATACACACCAACATAACAGTATAGAAATAGATATATATCAATGCGATAGAAA
CCTCATCTGTGGAGAAAGCAAAATGACAGAAACAATAGTAGTAAATGAAATTGAATACAC
CAATACGAAGGAACTCCTCGTGCTCG

consensusID : consensus_3020#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [AGAATCGCCACGAGGTGCATGCCTCGTGTATAGAGAGTGAAGCAGTTAAAGAGGGTTACATCATTTAGTAACATTAGTAGTAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATTATTAGATGCATAAACACACACACACACATACCAGTACCGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGCGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACAACTCACTCAACTCGTAACCGCGCGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACG]

[+] EMBL AL932551             [AGAATCGCCACGAGGTGCATGCCTCGTGTATAGAGAGTGAAGCAGTTAAAGAGGGTTACATCATTTAGTAACATTAGTAGTAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATTATTAGATGCATAAACACACACACACACATACCAGTACCGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGCGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACAACTCACTCAACTCGTAACCGCGCGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACG]




>consensus_3020#1
AGAATCGCCACGAGGTGCATGCCTCGTGTATAGAGAGTGAAGCAGTTAAAGAGGGTTACA
TCATTTAGTAACATTAGTAGTAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATA
GCAAAACTATTATTAGATGCATAAACACACACACACACATACCAGTACCGAGATGGAAAA
TTACACCCCACTTTTGCAAAATCACTATGAGACGTAGCGTAGTACGTACAACTCACTCTT
CCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCA
CATGAACCTGTATACTCAACAACAACAACAACTCACTCAACTCGTAACCGCGCGCACTGA
TAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3020#0      CCGCGGACGCGTGGGACACAGTGGTAAAGCGCATGTCTCGTGTATAGAGAGTAAAGCAGC 60
consensus_3020#1      --------------AGAATCGCCACGAGGTGCATGCCTCGTGTATAGAGAGTGAAGCA-- 44
                                       *  *     * * ***** **************** *****  

consensus_3020#0      GTTAAAGAGCGTTGCTTCATTTAGTAACATTAGTAGCAGTAGTAGTAGTAGTAGTAGTTT 120
consensus_3020#1      GTTAAAGAGGGTTACATCATTTAGTAACATTAGTAGTAGTAGTAGTAGTAGTAGTAGTTT 104
                      ********* *** * ******************** ***********************

consensus_3020#0      AATGGAAAGAGGTATAGCAAAACTATATTATTAGATGCATAAACACACACACACA--TAC 178
consensus_3020#1      AATGGAAAGAGGTATAGCAAAACTAT--TATTAGATGCATAAACACACACACACACATAC 162
                      **************************  ***************************  ***

consensus_3020#0      CAGTACCGAGGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAG-- 236
consensus_3020#1      CAGTACCGA---GATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGCG 219
                      *********   **********************************************  

consensus_3020#0      ---TACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCA 293
consensus_3020#1      TAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCA 279
                         *********************************************************

consensus_3020#0      ATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAAC---TCACTCA 350
consensus_3020#1      ATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACAACTCACTCA 339
                      **************************************************   *******

consensus_3020#0      ACTCGTAACCACGC--ACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAAC 408
consensus_3020#1      ACTCGTAACCGCGCGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAAC 399
                      ********** ***  ********************************************

consensus_3020#0      ACACGGCACTTGAAACGCAATAGTACACAGAAACAGAATATACATTCGATAGGAAACGGA 468
consensus_3020#1      ACACGGCACTTGAAACG------------------------------------------- 416
                      *****************                                           

consensus_3020#0      TGGATTTTGTTGTTGAACAAATACACACCAACATAACAGTATAGAAATAGATATATATCA 528
consensus_3020#1      ------------------------------------------------------------
                                                                                  

consensus_3020#0      ATGCGATAGAAACCTCATCTGTGGAGAAAGCAAAATGACAGAAACAATAGTAGTAAATGA 588
consensus_3020#1      ------------------------------------------------------------
                                                                                  

consensus_3020#0      AATTGAATACACCAATACGAAGGAACTCCTCGTGCTCG 626
consensus_3020#1      --------------------------------------