These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [GATACATTTGAGCAAAGTTATAATTTAGCGAGATGTTTTCATTCAAAGGACGTCATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACAGAAGCAACCACCACCACCAGCACCATCATCTGTAATTCGGCAATCCATCGACACCAAAGCGAAACTGGTAGGCATTAATCGTGCCCTGCACGAACGGCTACAGCAGACCCGCGCCAATCTGCGCCCCTTACAAGCACGAGCCGCACAGTTACAGCACCGCTTCGACGAGTACCAGCGTACCGCCGGCGCACGGCGACCGCCGTCATCCGGGCTTGCTGCCAGGGGGGCTCGCACCGAGCGCAATCAACTGCTCCAGGAAGCCCATCGACTTCGGGCCGCTGTCGAACGAAAGTTACAGGGCTTCGGTACGCTGGACCAGCGCTACCGAAGCATGCGAACGTTACTCGAGCCGAAAACGAAGAGCGCTGGACTGCCCCGGGCATGGCTCGATCGGGATACCGAGCGGCAGATGGAGTTGAACGAGCGCATCTACAAGAACATCATCGACCTGCTAGTGCACCTGATCGAGTGTCCGGTTAACATCATACACGAC] [+] EMBL BX608354 [GATACATTTGAGCAAAGTTATAATTTAGCGAGATGTTTTCATTCAAAGGACGTCATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACAGAAGCAACCACCACCACCAGCACCATCATCTGTAATTCGGCAATCCATCGACACCAAAGCGAAACTGGTAGGCATTAATCGTGCCCTGCACGAACGGCTACAGCAGACCCGCGCCAATCTGCGCCCCTTACAAGCACGAGCCGCACAGTTACAGCACCGCTTCGACGAGTACCAGCGTACCGCCGGCGCACGGCGACCGCCGTCATCCGGGCTTGCTGCCAGGGGGGCTCGCACCGAGCGCAATCAACTGCTCCAGGAAGCCCATCGACTTCGGGCCGCTGTCGAACGAAAGTTACAGGGCTTCGGTACGCTGGACCAGCGCTACCGAAGCATGCGAACGTTACTCGAGCCGAAAACGAAGAGCGCTGGACTGCCCCGGGCATGGCTCGATCGGGATACCGAGCGGCAGATGGAGTTGAACGAGCGCATCTACAAGAACATCATCGACCTGCTAGTGCACCTGATCGAGTGTCCGGTTAACATCATACACGAC] consensusID : consensus_3055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [AGATCGGCACGAGGGTTNGACGTATCGAAACTAATTTCCTGTTTTGAGTTGAGATATAAGCTCAACATCAAGGCTGCCATTCGATACAATTGAGCAAAGTTATAATTTAGCAACGATGTTTCCATTCAAAGGACGCAATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACANNAAGCAACCACCACCACCAGCACCAGTCATCTGCTAATTCGGCAATCCATCGACAGCCAAAGCGAAACTGGCTAGGCANTTAATCGTGCCCGTGGCACGAACGGCTGCAGCAGACCCGCGGCCAAGTCTGCGCCCCTGTGACAAGGGCACGAGCCGCGAC] [+] EMBL BX466315 [AGATCGGCACGAGGGTTNGACGTATCGAAACTAATTTCCTGTTTTGAGTTGAGATATAAGCTCAACATCAAGGCTGCCATTCGATACAATTGAGCAAAGTTATAATTTAGCAACGATGTTTCCATTCAAAGGACGCAATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCAGTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACANNAAGCAACCACCACCACCAGCACCAGTCATCTGCTAATTCGGCAATCCATCGACAGCCAAAGCGAAACTGGCTAGGCANTTAATCGTGCCCGTGGCACGAACGGCTGCAGCAGACCCGCGGCCAAGTCTGCGCCCCTGTGACAAGGGCACGAGCCGCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3055#0 ------------------------------------------------------------ consensus_3055#1 AGATCGGCACGAGGGTTNGACGTATCGAAACTAATTTCCTGTTTTGAGTTGAGATATAAG 60 consensus_3055#0 ----------------------GATACATTTGAGCAAAGTTATAATTTAGCGA-GATGTT 37 consensus_3055#1 CTCAACATCAAGGCTGCCATTCGATACAATTGAGCAAAGTTATAATTTAGCAACGATGTT 120 ****** ********************** * ****** consensus_3055#0 TTCATTCAAAGGACGTCATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCA 97 consensus_3055#1 TCCATTCAAAGGACGCAATTTGTATGCGTTAGGATTGATACTGTGCACATTGGAGCTGCA 180 * ************* ******************************************* consensus_3055#0 GTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACAGAA 157 consensus_3055#1 GTACATCACAGCAATTACACCACAATCGCTGCACCAACTATCACCAATCATCGAACANNA 240 ********************************************************* * consensus_3055#0 -GCAACCACCACCACCAGCACCA-TCATCTG-TAATTCGGCAATCCATCGACA-CCAAAG 213 consensus_3055#1 AGCAACCACCACCACCAGCACCAGTCATCTGCTAATTCGGCAATCCATCGACAGCCAAAG 300 ********************** ******* ********************* ****** consensus_3055#0 CGAAACTGG-TAGGCATT-AATCGTGCCCT--GCACGAACGGCTACAGCAGACCCGCGCC 269 consensus_3055#1 CGAAACTGGCTAGGCANTTAATCGTGCCCGTGGCACGAACGGCTGCAGCAGACCCGCGGC 360 ********* ****** * ********** ************ ************* * consensus_3055#0 --AATCTGCGCCCCT----TACAAGCACGAGCCGCACAGTTACAGCACCGCTTCGACGAG 323 consensus_3055#1 CAAGTCTGCGCCCCTGTGACAAGGGCACGAGCCGCGAC---------------------- 398 * *********** * *********** consensus_3055#0 TACCAGCGTACCGCCGGCGCACGGCGACCGCCGTCATCCGGGCTTGCTGCCAGGGGGGCT 383 consensus_3055#1 ------------------------------------------------------------ consensus_3055#0 CGCACCGAGCGCAATCAACTGCTCCAGGAAGCCCATCGACTTCGGGCCGCTGTCGAACGA 443 consensus_3055#1 ------------------------------------------------------------ consensus_3055#0 AAGTTACAGGGCTTCGGTACGCTGGACCAGCGCTACCGAAGCATGCGAACGTTACTCGAG 503 consensus_3055#1 ------------------------------------------------------------ consensus_3055#0 CCGAAAACGAAGAGCGCTGGACTGCCCCGGGCATGGCTCGATCGGGATACCGAGCGGCAG 563 consensus_3055#1 ------------------------------------------------------------ consensus_3055#0 ATGGAGTTGAACGAGCGCATCTACAAGAACATCATCGACCTGCTAGTGCACCTGATCGAG 623 consensus_3055#1 ------------------------------------------------------------ consensus_3055#0 TGTCCGGTTAACATCATACACGAC 647 consensus_3055#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||