cluster # 3081

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3081 cluster # 3081 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3081#0 length = 708 sequences # 1

consensus_3081#1 length = 473 sequences # 1

consensusID : consensus_3081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [CGAGGAGCATACGGATCCAGACAACAAGCCGACGCTGGTGGAGTACTGGAGCACTAAGGTTTCGACCGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTGAAACAAGCACGGATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAGTATCTGACCATATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTCTCAACGACAACTGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACAACCACTCAACAACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCAACTGATGACGTCGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACAAGCTCGTTAGAACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAACCAACAACAACCACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGACCACCAGCACCACTGAACAACACAACACCAACTCACCAACAACTTCCAGCGCACAGACGACGGGCAGCACAACAGCGACGACGTTCTTTGCTACTACACAAAACCCTCCTGCTAGCTACGAAACAATCAGCCCGAAACAGTGGCTCTGGATTACGTTGACAGCACTGGTTGCGGTACTGGTCGTGCT]

[+] EMBL BX620432             [CGAGGAGCATACGGATCCAGACAACAAGCCGACGCTGGTGGAGTACTGGAGCACTAAGGTTTCGACCGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTGAAACAAGCACGGATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAGTATCTGACCATATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTCTCAACGACAACTGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACAACCACTCAACAACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCAACTGATGACGTCGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACAAGCTCGTTAGAACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAACCAACAACAACCACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGACCACCAGCACCACTGAACAACACAACACCAACTCACCAACAACTTCCAGCGCACAGACGACGGGCAGCACAACAGCGACGACGTTCTTTGCTACTACACAAAACCCTCCTGCTAGCTACGAAACAATCAGCCCGAAACAGTGGCTCTGGATTACGTTGACAGCACTGGTTGCGGTACTGGTCGTGCT]




>consensus_3081#0
CGAGGAGCATACGGATCCAGACAACAAGCCGACGCTGGTGGAGTACTGGAGCACTAAGGT
TTCGACCGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTGAAACAAGCACG
GATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAGTATCTGACCAT
ATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTCTCAACGACAAC
TGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACAACCACTCAACA
ACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCAACTGATGACGT
CGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACAAGCTCGTTAGA
ACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAACCAACAACAAC
CACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGACCACCAGCACCACTGAACA
ACACAACACCAACTCACCAACAACTTCCAGCGCACAGACGACGGGCAGCACAACAGCGAC
GACGTTCTTTGCTACTACACAAAACCCTCCTGCTAGCTACGAAACAATCAGCCCGAAACA
GTGGCTCTGGATTACGTTGACAGCACTGGTTGCGGTACTGGTCGTGCT

consensusID : consensus_3081#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [GCAGATCGGCACCGAGGCGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTGAAACAAGCACGGATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAGTATCTGACCATATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTCTCAACGACAACTGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACAACCACTCAACAACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCAACTGATGACGTCGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACAAGCTCGTTAGAACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAACCAACAACAACCACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGAC]

[+] EMBL BX466408             [GCAGATCGGCACCGAGGCGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTGAAACAAGCACGGATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAGTATCTGACCATATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTCTCAACGACAACTGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACAACCACTCAACAACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCAACTGATGACGTCGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACAAGCTCGTTAGAACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAACCAACAACAACCACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGAC]




>consensus_3081#1
GCAGATCGGCACCGAGGCGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTG
AAACAAGCACGGATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAG
TATCTGACCATATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTC
TCAACGACAACTGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACA
ACCACTCAACAACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCA
ACTGATGACGTCGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACA
AGCTCGTTAGAACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAA
CCAACAACAACCACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3081#0      CGAGGAGCATACGGATCCAGACAACAAGCCGACGCTGGTGGAGTACTGGAGCACTAAGGT 60
consensus_3081#1      --------------------------------------------------GCAGATCGGC 10
                                                                        ***    ** 

consensus_3081#0      TTCGAC-CGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTGAAACAAGCAC 119
consensus_3081#1      ACCGAGGCGATGGATGGGGATACTTTCGCGAGAAGCTTAACAAAACGGTGAAACAAGCAC 70
                        ***  *****************************************************

consensus_3081#0      GGATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAGTATCTGACCA 179
consensus_3081#1      GGATTCAAATTGAAGCCAACATCAACGCTGGAAGCGACTTGGCCATTGAGTATCTGACCA 130
                      ************************************************************

consensus_3081#0      TATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTCTCAACGACAA 239
consensus_3081#1      TATTTAACTACGAGGTAGAAACGGAAGAGTGTAGTACGATTGATGAGTTCTCAACGACAA 190
                      ************************************************************

consensus_3081#0      CTGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACAACCACTCAAC 299
consensus_3081#1      CTGGCGTGCCGCCGTCAAGTACAAGCACGGTGACAATGCCAGCGACAACAACCACTCAAC 250
                      ************************************************************

consensus_3081#0      AACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCAACTGATGACG 359
consensus_3081#1      AACCTGACACAACTCCACCGGTCCAGACAACGACGTCCGCTGCGTTATCAACTGATGACG 310
                      ************************************************************

consensus_3081#0      TCGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACAAGCTCGTTAG 419
consensus_3081#1      TCGAAGCAGCAACCACAACTACAACGGAAGTCAGCGAAGAGCTGACGACAAGCTCGTTAG 370
                      ************************************************************

consensus_3081#0      AACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAACCAACAACAA 479
consensus_3081#1      AACAAACAACTACAACGACTGTTGCTACTACTACTACCACCACAGTTGAACCAACAACAA 430
                      ************************************************************

consensus_3081#0      CCACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGACCACCAGCACCACTGAAC 539
consensus_3081#1      CCACCACCAATAATCCGCGTGATGACAGCTCCTTGCAACCGAC----------------- 473
                      *******************************************                 

consensus_3081#0      AACACAACACCAACTCACCAACAACTTCCAGCGCACAGACGACGGGCAGCACAACAGCGA 599
consensus_3081#1      ------------------------------------------------------------
                                                                                  

consensus_3081#0      CGACGTTCTTTGCTACTACACAAAACCCTCCTGCTAGCTACGAAACAATCAGCCCGAAAC 659
consensus_3081#1      ------------------------------------------------------------
                                                                                  

consensus_3081#0      AGTGGCTCTGGATTACGTTGACAGCACTGGTTGCGGTACTGGTCGTGCT 708
consensus_3081#1      -------------------------------------------------