These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CCCCNAGGTAACGTGGGCGTGAACGCATTGTCATNCTACTGTGTGCATTTGAAGTTAAACAGCTCGTGAAATTAAGTGGAAGTGTTTATAAATTAGGTCAATCAAGCACAACTAAAACGGAGTTTAACACTGCCAAACAAAAATGATAATGAAACAGTTAGTTTATGGGCTTGTCCTTAAACAATGTTTAATTAATTGAAACAAATCCCTATCCAGAATACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGCCCGTCCGGTGCGGTGTACGAATACTCTCCTTGAGCCACCTGCGAAAACGAAGAAGCTGCTTAGTGGCAATGCGACGAACCTCACCATTTAACCTTCTGCGCCAGGACGAGGTGTGAACGGGTGCTCATGTCTGCGCATGAGCTCCTCACGATCCAAGGACGAGTTTCGATCGGAGTGGTTTAGTCGATGGATATCGGCGTGAGCTAGCCACAAA] [+] EMBL AL932273 [CCCCNAGGTAACGTGGGCGTGAACGCATTGTCATNCTACTGTGTGCATTTGAAGTTAAACAGCTCGTGAAATTAAGTGGAAGTGTTTATAAATTAGGTCAATCAAGCACAACTAAAACGGAGTTTAACACTGCCAAACAAAAATGATAATGAAACAGTTAGTTTATGGGCTTGTCCTTAAACAATGTTTAATTAATTGAAACAAATCCCTATCCAGAATACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGCCCGTCCGGTGCGGTGTACGAATACTCTCCTTGAGCCACCTGCGAAAACGAAGAAGCTGCTTAGTGGCAATGCGACGAACCTCACCATTTAACCTTCTGCGCCAGGACGAGGTGTGAACGGGTGCTCATGTCTGCGCATGAGCTCCTCACGATCCAAGGACGAGTTTCGATCGGAGTGGTTTAGTCGATGGATATCGGCGTGAGCTAGCCACAAA] consensusID : consensus_3117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CGCACATGCCTGCCCTTTGTTGTTNTAATTTTATATTAAGATACAGCAAAAGGTGTTATGATTTATTCACATAACTTGTTGGGTATAGGATTGCCCCGCGACGTGTGGTATGAGCGAGTAATGTATTTCGTTTTCACTGTTTTCTAAACCTAAATGAGCGACTGACGATGGAGTTTTCTACGTGATAAATGTGTTCGCTATTCCTCTCCTTCAGTACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGNCCGTCCGGT] [+] EMBL BX466883 [CGCACATGCCTGCCCTTTGTTGTTNTAATTTTATATTAAGATACAGCAAAAGGTGTTATGATTTATTCACATAACTTGTTGGGTATAGGATTGCCCCGCGACGTGTGGTATGAGCGAGTAATGTATTTCGTTTTCACTGTTTTCTAAACCTAAATGAGCGACTGACGATGGAGTTTTCTACGTGATAAATGTGTTCGCTATTCCTCTCCTTCAGTACCTCCGCGAAGCATCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATCGGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTACTGCACCCGAATGAGCTGNCCGTCCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3117#0 CCCCNAGGTAACGTGGGCGTGAACGCATTGTCATNCTACTGTGT-GCATTTGAAGTTA-- 57 consensus_3117#1 CGCACATGCCTGCCCTTTGTTGTTNTAATTTTATATTAAGATACAGCAAAAGGTGTTATG 60 * * * * ** * * * ** ** * *** * **** consensus_3117#0 AACAGCTCGTGAAATTAAGTGGA---AGTGTTTATAAATTAGGTCAATCAAGCACAACTA 114 consensus_3117#1 ATTTATTCACATAACTTGTTGGGTATAGGATTGCCCCGCGACGTGTGGTATGAGCGAGTA 120 * ** ** * *** ** ** * ** * * * * ** consensus_3117#0 AAACGGAGT-TTAACACTGCCAAACAAAAATGATAATGAAACAGTTAGTTTATGGGCTTG 173 consensus_3117#1 ATGTATTTCGTTTTCACTGTTTTCTAAACCTAA--ATGAGCGACTGACGATGGAGTTTTC 178 * ** ***** *** * * **** * * * * * ** consensus_3117#0 TCCTTAAACAATGTTTAATTAATTGAAACAAATCCCTATCCAGAATACCTCCGCGAAGCA 233 consensus_3117#1 TACGTGATAAATGT---GTTCGCT------ATTCCTCTCCTTCAGTACCTCCGCGAAGCA 229 * * * * ***** ** * * *** * * *************** consensus_3117#0 TCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATC 293 consensus_3117#1 TCATCACTCGGTGGCAGACTGGCCAAGTACTCGAGCGCACGCTGGATTGCTGGCGGAATC 289 ************************************************************ consensus_3117#0 GGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTAC 353 consensus_3117#1 GGTGGTGGCGTAGGCAGGTGATCACCGAGCGGCTGGAAACCGTTCTCGTCCGCAATGTAC 349 ************************************************************ consensus_3117#0 TGCACCCGAATGAGCTGCCCGTCCGGTGCGGTGTACGAATACTCTCCTTGAGCCACCTGC 413 consensus_3117#1 TGCACCCGAATGAGCTGNCCGTCCGGT--------------------------------- 376 ***************** ********* consensus_3117#0 GAAAACGAAGAAGCTGCTTAGTGGCAATGCGACGAACCTCACCATTTAACCTTCTGCGCC 473 consensus_3117#1 ------------------------------------------------------------ consensus_3117#0 AGGACGAGGTGTGAACGGGTGCTCATGTCTGCGCATGAGCTCCTCACGATCCAAGGACGA 533 consensus_3117#1 ------------------------------------------------------------ consensus_3117#0 GTTTCGATCGGAGTGGTTTAGTCGATGGATATCGGCGTGAGCTAGCCACAAA 585 consensus_3117#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||