These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [CCNAGGTTATGTTGTCGCTATGGAGCAACTACGAGCGGCACAAAACCCGTCACGCTTACGTACACGAAGCAGGAAGGTTATTACGTATGTGTGTGTACTGCGTTATCATTGAATATGACGTCATATGGTTCGTGTTTTACCTTGTGTAATAACCTCTCTATAGCCTAGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGGGTCACGCGTAATACACGCGAGTGCTGGTAGTATTCGAACGCACGCAGCATCCGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAAATGACGCTCTCTGTATGAGAGTGTGCGGTATGGGTGTCTAGACGACAACGATAATGGCACATTATCTAACCCCCCCTTTTAATAAACGCTAAAAACAAACG] [+] EMBL AL931665 [CCNAGGTTATGTTGTCGCTATGGAGCAACTACGAGCGGCACAAAACCCGTCACGCTTACGTACACGAAGCAGGAAGGTTATTACGTATGTGTGTGTACTGCGTTATCATTGAATATGACGTCATATGGTTCGTGTTTTACCTTGTGTAATAACCTCTCTATAGCCTAGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGGGTCACGCGTAATACACGCGAGTGCTGGTAGTATTCGAACGCACGCAGCATCCGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAAATGACGCTCTCTGTATGAGAGTGTGCGGTATGGGTGTCTAGACGACAACGATAATGGCACATTATCTAACCCCCCCTTTTAATAAACGCTAAAAACAAACG] consensusID : consensus_3132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [AGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGCGTCACGCGTAATACACGCGAGTGCTGTTAGTATTCGAACGCACGCAGCAGCGGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAGATGAATAAAACGGGATATATGGTGGCTCTGTATGAGCGTGTGCGGTATAAGTGTCTAGATGGCAACGATAATGGCACATTAT] [+] EMBL BX610406 [AGCTGCTGTATCTCTCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGCGTCACGCGTAATACACGCGAGTGCTGTTAGTATTCGAACGCACGCAGCAGCGGAAACTCCTTACATTAATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAGATGAATAAAACGGGATATATGGTGGCTCTGTATGAGCGTGTGCGGTATAAGTGTCTAGATGGCAACGATAATGGCACATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3132#0 CCNAGGTTATGTTGTCGCTATGGAGCAACTACGAGCGGCACAAAACCCGTCACGCTTACG 60 consensus_3132#1 ------------------------------------------------------------ consensus_3132#0 TACACGAAGCAGGAAGGTTATTACGTATGTGTGTGTACTGCGTTATCATTGAATATGACG 120 consensus_3132#1 ------------------------------------------------------------ consensus_3132#0 TCATATGGTTCGTGTTTTACCTTGTGTAATAACCTCTCTATAGCCTAGCTGCTGTATCTC 180 consensus_3132#1 ----------------------------------------------AGCTGCTGTATCTC 14 ************** consensus_3132#0 TCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGGGTCACGC 240 consensus_3132#1 TCGATGTCGTGACAAGCGTCCTATTGTAGGGACCATCTTGATGAATGGTTAGCGTCACGC 74 **************************************************** ******* consensus_3132#0 GTAATACACGCGAGTGCTGGTAGTATTCGAACGCACGCAGCATCCGAAACTCCTTACATT 300 consensus_3132#1 GTAATACACGCGAGTGCTGTTAGTATTCGAACGCACGCAGCAGCGGAAACTCCTTACATT 134 ******************* ********************** * *************** consensus_3132#0 AATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAAATGA--------- 351 consensus_3132#1 AATCCCGGAGCTATGAATACGCCTCCCGATAGCCGTTAAACGCACAGATGAATAAAACGG 194 ********************************************** **** consensus_3132#0 ------CGCT--CTCTGTATGAGAGTGTGCGGTATGGGTGTCTAGACGACAACGATAATG 403 consensus_3132#1 GATATATGGTGGCTCTGTATGAGCGTGTGCGGTATAAGTGTCTAGATGGCAACGATAATG 254 * * *********** *********** ********* * *********** consensus_3132#0 GCACATTATCTAACCCCCCCTTTTAATAAACGCTAAAAACAAACG 448 consensus_3132#1 GCACATTAT------------------------------------ 263 ********* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||