These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1052 fasta sequence [TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAGGCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTTCTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGACAAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCAATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAGGTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGGCTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCAAACTCTCTAGTTCGTTGCACCCCGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGAATAGGCCGATCGGCATCATCCGCAAGACAGCGGA] [+] EMBL BX621591 [TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAGGCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTTCTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGACAAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCAATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAGGTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGGCTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACC ] [+] EMBL BM632651 [ ccGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCAAACTCTCTAGTTCGTTGCACCCCGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGAATAGGCCGATCGGCATCATCCGCAAGACAGCGGA] consensusID : consensus_3173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [GCGAGATCGGCACGAGGCGAGGTGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAACTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGATAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG] [+] EMBL BX619729 [GCGAGATCGGCACGAGGCGAGGTGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAACTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGATAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3173#0 TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAG 60 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 GCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTT 120 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 CTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGAC 180 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 AAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCA 240 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 ATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAG 300 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 GTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGG 360 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 CTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCT 420 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 CTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAG 480 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 CCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTA 540 consensus_3173#1 ------------------------------------------------------------ consensus_3173#0 CTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCA 600 consensus_3173#1 ----------------------GCGAGATCGGCACGAGGCG-AGGTGCGAACACTGGCCA 37 ** * ** * * ************** consensus_3173#0 CTGTACACGAGGGAGAACCCGATCTACTTTATC-TTCAACGCGGAGGGCGAGGACGATCT 659 consensus_3173#1 CTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCT 97 ******************************** ************************** consensus_3173#0 GCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTT 719 consensus_3173#1 GCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTT 157 ****************** ***************************************** consensus_3173#0 CCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCA 779 consensus_3173#1 CCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCA 217 ************************************************************ consensus_3173#0 CACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAG 839 consensus_3173#1 CACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAG 277 ************************************************************ consensus_3173#0 TCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCA 899 consensus_3173#1 TCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCA 337 ************************************************************ consensus_3173#0 TTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCC-AAA 958 consensus_3173#1 TTATCCC-GTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAA 396 ******* ************************************************ *** consensus_3173#0 CTCTCTAGTTCGTTGCACCCCGG-ATGGAAACAGCCTATTTATCCATGCTTGACCCCGCG 1017 consensus_3173#1 CTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCG 456 ********************* * ************************************ consensus_3173#0 AATAGGCCGATCGGCATCATCCGCAAGACAGCGGA--- 1052 consensus_3173#1 A-TAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG 493 * ************ ******** *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||