These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3183#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 791 fasta sequence [CCGCCGCAAGTACGCGCTAGCAGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGACAGTGGCAATCCAGTGGCAATGCAGTACCGCTCACCGACGTCCATCTTAATTTTCTTCTGTTTGGTATTCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTACAACAAAAATGGAAAATACGTGCACAGAGGTGA-----AGGAGACTACGTGGAGGATCTGAGCCGGTACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTTCCACATACACATACCTTATGATGGTGGTTACGGCAACTACGAGGGTGGCCACGAGCCCTACCGATTCCCACCGTACGATCCAGCCGGAGAGTATGCCGAACAAGTGAATAAGTATTCGTACGATCCTTTCCGAGCGGATTCGTACGATATCAAGAAACCATCCATCTATCTTGAGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACNACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGAC] [+] EMBL BM630734 [CCGCCGCAAGTACGCGCTAGCAGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGACAGTGGCAATCCAGTGGCAATGCAGTACCGCTCACCGACGTCCATCTTAATTTTCTTCTGTTTGGTATTCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTACAACAAAAATGGAAAATACGTGCACAGAGGTGA AGGAGACTACGTGGAGGATCTGAGCCGGTACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTTCCACATACACATACCTTATGATGGTGGTTACGGCAACTACGAGGGTGGCCACGAGCCCTACCGAT ] [+] EMBL BX622949 [ AGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGACAGTGGCAATCCAGTGGCAATGCAGTACCGCACACCGACGTCCATCTTAATTTTCTTCTGTTTGGTATGCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTACAACAAAAATGGAAAATACGTGCACAGAGGTGAAGGACAGGAGACTACGTGGAGGATCTGAGCCGGTACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTACCACATACACATACCGTATGATGGTGGTTACGGCAACTACGAAGGTGGCCACGAGCCCTACCGATTCCCACCGTACGATCCAGCCGGAGAGTATGCCGAACAAGTGAATAAGTATTCGTACGATCCTTTCCGAGCGGATTCGTACGATATCAAGAAACCATCCATCTATCTTGAGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACNACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGAC] consensusID : consensus_3183#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GGCAGAATCGGCACGTGGAAGAAACATCCATCTATCTTGACGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACAACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGACAACAGTGCCTAATATACTAACCGATCGGTCCGATCCGATCGATGACAGTTCGCTGCACGGCCGTCCCTGCTTTGCCACCAGCGCCCCACTAAAGCTCTCCAAAAGCGTGACGAGTGAATGAACAGCTTCGCCAAGCTTTTACGGATTCACCGGGTTGCTGTGATGATCCACTTAGGTTAGTTGATAAGCGGTTCGTGCTACTGTAT] [+] EMBL BX468133 [GGCAGAATCGGCACGTGGAAGAAACATCCATCTATCTTGACGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACAACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGACAACAGTGCCTAATATACTAACCGATCGGTCCGATCCGATCGATGACAGTTCGCTGCACGGCCGTCCCTGCTTTGCCACCAGCGCCCCACTAAAGCTCTCCAAAAGCGTGACGAGTGAATGAACAGCTTCGCCAAGCTTTTACGGATTCACCGGGTTGCTGTGATGATCCACTTAGGTTAGTTGATAAGCGGTTCGTGCTACTGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3183#0 CCGCCGCAAGTACGCGCTAGCAGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGAC 60 consensus_3183#1 ------------------------------------------------------------ consensus_3183#0 AGTGGCAATCCAGTGGCAATGCAGTACCGCTCACCGACGTCCATCTTAATTTTCTTCTGT 120 consensus_3183#1 ------------------------------------------------------------ consensus_3183#0 TTGGTATTCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTAC 180 consensus_3183#1 ------------------------------------------------------------ consensus_3183#0 AACAAAAATGGAAAATACGTGCACAGAGGTGAAGGAGACTACGTGGAGGATCTGAGCCGG 240 consensus_3183#1 ------------------------------------------------------------ consensus_3183#0 TACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTTCCACATACACATACCT 300 consensus_3183#1 ------------------------------------------------------------ consensus_3183#0 TATGATGGTGGTTACGGCAACTACGAGGGTGGCCACGAGCCCTACCGATTCCCACCGTAC 360 consensus_3183#1 ------------------------------------------------------------ consensus_3183#0 GATCCAGCCGGAGAGTATGCCGAACAAGTGAATAAGTATTCGTACGATCCTTTCCGAGCG 420 consensus_3183#1 --------------------------------------------------------GGCA 4 ** consensus_3183#0 GATTCGTACGATATCAAGAAACCATCCATCTATCTTGA-GTACGGTATACCTTCGGTGTC 479 consensus_3183#1 GAATCGGC--ACGTGGAAGAAACATCCATCTATCTTGACGTACGGTATACCTTCGGTGTC 62 ** *** * * * ** **************** ********************* consensus_3183#0 CGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGG 539 consensus_3183#1 CGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGG 122 ************************************************************ consensus_3183#0 AACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCC 599 consensus_3183#1 AACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCC 182 ************************************************************ consensus_3183#0 TGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGG 659 consensus_3183#1 TGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGG 242 ************************************************************ consensus_3183#0 CTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCA 719 consensus_3183#1 CTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCA 302 ************************************************************ consensus_3183#0 CCTCACNACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCC 779 consensus_3183#1 CCTCACAACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCC 362 ****** ***************************************************** consensus_3183#0 GATCGAGACGAC------------------------------------------------ 791 consensus_3183#1 GATCGAGACGACAACAGTGCCTAATATACTAACCGATCGGTCCGATCCGATCGATGACAG 422 ************ consensus_3183#0 ------------------------------------------------------------ consensus_3183#1 TTCGCTGCACGGCCGTCCCTGCTTTGCCACCAGCGCCCCACTAAAGCTCTCCAAAAGCGT 482 consensus_3183#0 ------------------------------------------------------------ consensus_3183#1 GACGAGTGAATGAACAGCTTCGCCAAGCTTTTACGGATTCACCGGGTTGCTGTGATGATC 542 consensus_3183#0 -------------------------------------- consensus_3183#1 CACTTAGGTTAGTTGATAAGCGGTTCGTGCTACTGTAT 580 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||