These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [TGCTCAACCGAGTTGGGGCAGCTGGTGGGTGGCAATCGTTCATTGGATGGTTTGACAAAAAACGAGCACCTATGTTTCCGCAGCGATCAATGGATAGTACCGGGTGTATGCGAGGATGTTCCTGGAGCACCAGTACTGCGTTACATAAATCGTGCTGGTGCCTTCTTTAAGTACGTATACGCGTTGACCGTTGCAGGACAGACTTGTGGCCATGGAATACCGACAATCGCTGTACAACTAGCCCCGCACGCCGCCTGGTTGCGATCCGTTATTCTCGACAAAAGTAACTCTGGTGGGCAGAAAGCTTCAGAATCAGTGATTATAATCAATCCGGATCTGAAACGAAGTGATGAATGCTGCAATGGGGATGGTACAATGGGTATTTGCGTACCGTATGCAATGTGCCTTAGCACTAAGGAACGCTTGCGTAAAGGTGAACGAGTGACACTTTGTACGGACGGTACGGTCGTTTGCTGTCCTTGGGGTGATATTGCGAGAAATTCTGGCGGTGATCTAATTCGCACCGAGCTCGACAGCTGTGAAAATCGTTATCATTCTTTACGCCGTCAACGCTATTCGGGATTTAGTCAAAACGAGTCCCTGTACAGCAATCTACCCCATGTAGCCGAAGTCGGTTGGCCTCAGAACAATGGAGGGATAGCGTTTGAGTGTTTTGGATATCTAATCACCTCCAGTATAGTAGTGACGAGTGCCCGTTGTTTGGAAACGTACTCCTACNAACCGGTAGTGGCACGAATTGGATCAGTGCAAGCCGCTGACTCATCGAACTACATTATCCAACTAT] [+] EMBL BX623709 [TGCTCAACCGAGTTGGGGCAGCTGGTGGGTGGCAATCGTTCATTGGATGGTTTGACAAAAAACGAGCACCTATGTTTCCGCAGCGATCAATGGATAGTACCGGGTGTATGCGAGGATGTTCCTGGAGCACCAGTACTGCGTTACATAAATCGTGCTGGTGCCTTCTTTAAGTACGTATACGCGTTGACCGTTGCAGGACAGACTTGTGGCCATGGAATACCGACAATCGCTGTACAACTAGCCCCGCACGCCGCCTGGTTGCGATCCGTTATTCTCGACAAAAGTAACTCTGGTGGGCAGAAAGCTTCAGAATCAGTGATTATAATCAATCCGGATCTGAAACGAAGTGATGAATGCTGCAATGGGGATGGTACAATGGGTATTTGCGTACCGTATGCAATGTGCCTTAGCACTAAGGAACGCTTGCGTAAAGGTGAACGAGTGACACTTTGTACGGACGGTACGGTCGTTTGCTGTCCTTGGGGTGATATTGCGAGAAATTCTGGCGGTGATCTAATTCGCACCGAGCTCGACAGCTGTGAAAATCGTTATCATTCTTTACGCCGTCAACGCTATTCGGGATTTAGTCAAAACGAGTCCCTGTACAGCAATCTACCCCATGTAGCCGAAGTCGGTTGGCCTCAGAACAATGGAGGGATAGCGTTTGAGTGTTTTGGATATCTAATCACCTCCAGTATAGTAGTGACGAGTGCCCGTTGTTTGGAAACGTACTCCTACNAACCGGTAGTGGCACGAATTGGATCAGTGCAAGCCGCTGACTCATCGAACTACATTATCCAACTAT] consensusID : consensus_3188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence [CCGCCCACGCGTCCGCCGAGCTCGACAGCTGTGAAAATCGTTATCATTCTTTACGTCGTCAACGCTATTCGGGATTTAGTCAAAACGAGTCCCTGTACAGCAATCTACCCCATGTAGTCGAAGTCGGTTGGCCTCAGAACAATGGAGGGATAGCGTTTGAGTGTTTTGGATATCTAATCACCTCCAGTATAATAGTGACGAGTGCCCGTTGTTTGGAAACGTACTCCTACAAACCGGTAGTGGCACGAATTGGATCAGTGCAAGCCGCTGACTCATCGAACTACATTATCCAAACTATTCGTCGGGTTCGTGTCCATGACGACTACGACTCGCAAACTGGTGCCAACAACATAGGGCTGCTAATTCTTGCAGCGCCGATAGAAATTAATGAATATCATTTCCCAGGATGTTTATATCGGAATAACACACATCTACCTACGCGACAGTTTGCTATAAGCGATGATCGAGATGCAACATTTTTATTGAAAGTATCGCCTATTTATCAGAGCGAGTGTCAGCAGCGTTTGACAGTGCCGCTCGTTTCTGGGCAGATGTGTCTACTGAAAGCTCAACCGGAAGGAGTGTACAATCCAAGAAATAAGTGCCTTAGAACTGGCGATTTGATTGTGTGGGAGCCTCGCACTGAGGAAGAGGAT] [+] EMBL BM641048 [CCGCCCACGCGTCCGCCGAGCTCGACAGCTGTGAAAATCGTTATCATTCTTTACGTCGTCAACGCTATTCGGGATTTAGTCAAAACGAGTCCCTGTACAGCAATCTACCCCATGTAGTCGAAGTCGGTTGGCCTCAGAACAATGGAGGGATAGCGTTTGAGTGTTTTGGATATCTAATCACCTCCAGTATAATAGTGACGAGTGCCCGTTGTTTGGAAACGTACTCCTACAAACCGGTAGTGGCACGAATTGGATCAGTGCAAGCCGCTGACTCATCGAACTACATTATCCAAACTATTCGTCGGGTTCGTGTCCATGACGACTACGACTCGCAAACTGGTGCCAACAACATAGGGCTGCTAATTCTTGCAGCGCCGATAGAAATTAATGAATATCATTTCCCAGGATGTTTATATCGGAATAACACACATCTACCTACGCGACAGTTTGCTATAAGCGATGATCGAGATGCAACATTTTTATTGAAAGTATCGCCTATTTATCAGAGCGAGTGTCAGCAGCGTTTGACAGTGCCGCTCGTTTCTGGGCAGATGTGTCTACTGAAAGCTCAACCGGAAGGAGTGTACAATCCAAGAAATAAGTGCCTTAGAACTGGCGATTTGATTGTGTGGGAGCCTCGCACTGAGGAAGAGGAT] [+] EMBL BM630422 [ AGTCAAAACGAGTCCCTGTACAGCAATCTACCCCATGTACTCGAAGTCGGTTGGCCTCAGAACAATGGAGGGATAGCGTTTGAGTGTTTTGGATATCTAATCACCTCCAGTATAATAGTGACGAGTGCCCGTTGTTTGGAAACGTACTCCTACAAACCGGTAGTGGCACGAATTGGATCAGTGCAAGCCGCTGACTCATCGAACTACATTATCCAAACTATTCGTCGGGTTCGTGTCCATGACGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3188#0 -------TGC-TCAACCGAGTTGGGGCAGCTG-GTGGGTGGCAATCGTTCATTGGATGGT 51 consensus_3188#1 CCGCCCACGCGTCCGCCGAGCTCGA-CAGCTGTGAAAATCGTTATCATTCTTTACGTCGT 59 ** ** ***** * * ****** * * * *** *** ** * ** consensus_3188#0 TTGACAAAAAACGAGCACCTATGTTTCCGCAGCGATCAATGGATAG-TACCGGGTGTATG 110 consensus_3188#1 C-AACGCTATTCGGGATTTAGTCAAAACGAGTCCCTGTACAGCAATCTACCCCATGTAGT 118 ** * ** * * ** * * * * * **** **** consensus_3188#0 CGAGGATGTTCCTGGAGCACCAGTACTGCGTTACATAAATCGTGCTGGTGCCTTCTTTAA 170 consensus_3188#1 CGAAGTCGGTT----GGCCTCAGAACAATG---GAGGGATAGCGTT--TGAGTGTTTTGG 169 *** * * * ** *** ** * * ** * * * ** * *** consensus_3188#0 GTACGTATACGCGTTGACCGTTGCAGGACAGACTTGTGGCCATGGAATACCGACA-ATCG 229 consensus_3188#1 ATATCTAATCACCT---CCAGTATAATAGTGACGAGTGCCCGTTGTTTGGAAACGTACTC 226 ** ** * * * ** * * * *** *** ** * * * ** * consensus_3188#0 CTGTACAAC--TAGCCCCGCACGCCGCCTGGTTGCGATCCGTTATTCTCGACAAAAGTAA 287 consensus_3188#1 CTACAAACCGGTAGTGGCACGAATTGGATCAGTGCAAGCCGCT------GACTCATCGAA 280 ** * * * *** * * * * *** * *** * *** * ** consensus_3188#0 CTCTGGTGGGCAGAAAGCTT-CAGAATCAGTGATTATAATCAATCCGGATCTGAAACGAA 346 consensus_3188#1 CTACATTATCCAAACTATTCGTCGGGTTCGTGTCCATGACGACTACGACTCGCAAAC--- 337 ** * ** * * * * *** ** * * * ** ** **** consensus_3188#0 GTGATGAATGCTGCAATGGGGATGGTACAATGGGTATTTGCGTACCGTATGCAATGTGCC 406 consensus_3188#1 -TGGTGCCAACAACA-TAGGGCTGCTAATTCTTGCAGC-GCCGATAGAAATTAATGAATA 394 ** ** * ** * *** ** ** * * ** * * * **** consensus_3188#0 TTAGCACTAAGGAACGCTTGCGTAAAGGTGAACGAGTGACACTTTGTACGGACGGTACGG 466 consensus_3188#1 TCATTTCCCAGGA-TGTTTATATCGGAAT-AACACACATCTACCTACGCG-ACAGTTTGC 451 * * * **** * ** * * *** * * ** ** ** * consensus_3188#0 T-CGTTTGCTGTCCTTGGGGTGATATTGCGAGAAATTCTGGCGGTGATCTAATTCGCACC 525 consensus_3188#1 TATAAGCGATGATCGAGATGCAACATTTTTATTGAAAGTATCGCCTATTTA--TCAGAGC 509 * * ** * * * * *** * * * ** ** ** ** * * consensus_3188#0 GAGC-TCGACAGCTGTGAAAATCGTTATCATTCTTTACGCCGTCAACGCTATTCGGGATT 584 consensus_3188#1 GAGTGTCAGCAGCGTTTGACAGTGCCGCTCGTTTCTGGGCAGATGTGTCTACTGAAAGCT 569 *** ** **** * * * * * * * ** * *** * * consensus_3188#0 TAGTCAAAACGAGTCCCTGTACAGCAATCTACCCCATGTA-GCCGAAGTCGGTTGGCCTC 643 consensus_3188#1 CAACCGGAAGGAGT----GTAC---AATCCAAGAAATAAGTGCCTTAG--AACTGGCGAT 620 * * ** **** **** **** * ** *** ** **** consensus_3188#0 AGAACAATGGAGGGATAGCGTTTGAGTGTTTTGGATATCTAATCACCTCCAGTATAGTAG 703 consensus_3188#1 TTGATTGTGTGGGAGCCTCGCACTGAGGAAGAGGAT------------------------ 656 * ** ** ** * **** consensus_3188#0 TGACGAGTGCCCGTTGTTTGGAAACGTACTCCTACNAACCGGTAGTGGCACGAATTGGAT 763 consensus_3188#1 ------------------------------------------------------------ consensus_3188#0 CAGTGCAAGCCGCTGACTCATCGAACTACATTATCCAACTAT 805 consensus_3188#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||