These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 766 fasta sequence [CCGCGGACGCGTGGGTGCACAGCGGATTTGGCGGCTTGCATCCGTATCAGCCTAACGTCTCTAACGGTCTCTTTCTCCTTCGCCTTTCAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGGTTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATTCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGTTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGACGAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCGCCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGAGACATTTAATGCTGGGGGAAATTCCTTGGCTCCGTCTGCATGCAAGTTGCTCTCGAAAGAAGAAGAAACAAAAAGTCGAACAAAAAGATGTCTTTCATCTGCTGCCAGCGACGAAG] [+] EMBL BM648325 [CCGCGGACGCGTGGGTGCACAGCGGATTTGGCGGCTTGCATCCGTATCAGCCTAACGTCTCTAACGGTCTCTTTCTCCTTCGCCTTTCAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGGTTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATTCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGTTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGACGAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCGCCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGAGACATTTAATGCTGGGGGAAATTC ] [+] EMBL BX624985 [ gTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGGTTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGCTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGACGAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCGCCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGAGACATTTAATGCT GGGGAAATTCCTTGGCTCCGTCTGCATGCAAGTTGCTCTCGAAAGAAGAAGAAACAAAAAGTCGAACAAAAAGATGTCTTTCATCTGCTGCCAGCGACGAAG] consensusID : consensus_3204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTTCATCATTTATTTTGATTTTGCATTGAAAACATTAGCGTGCAGATTCAATTATTGTTTGTGTTATTCATCGGTACTATCAAAACAAAGATATAAAAAGTCATCCAAAAAGCTGAGCAAACTCACTCAATTACTAAGTCCAAAGCGGTATCGTCCAAACCATTTACCGTGCACAATGATCGATACAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGATACGACCGCGTCCCTTCTAGACAACGTTTACCGATTGGTAAAGGTGCATACCGGCAGTAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGCTCGTG] [+] EMBL BM628307 [CCGCCCACGCGTCCGCCCACGCGTCCGTTCATCATTTATTTTGATTTTGCATTGAAAACATTAGCGTGCAGATTCAATTATTGTTTGTGTTATTCATCGGTACTATCAAAACAAAGATATAAAAAGTCATCCAAAAAGCTGAGCAAACTCACTCAATTACTAAGTCCAAAGCGGTATCGTCCAAACCATTTACCGTGCACAATGATCGATACAGTTATGACGGATAATGCCTTCAAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAAAATGTGGCTAAAGTGTTCATCGACGATACGACCGCGTCCCTTCTAGACAACGTTTACCGATTGGTAAAGGTGCATACCGGCAGTAAAAAGGATGCGGAACGATTGGTTAAGAACATCATCAAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTGCGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTCTACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGCAGCCTGTTGCGCTCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3204#0 ------------------------------------------------------------ consensus_3204#1 CCGCCCACGCGTCCGCCCACGCGTCCGTTCATCATTTATTTTGATTTTGCATTGAAAACA 60 consensus_3204#0 ------------------------------------------------------------ consensus_3204#1 TTAGCGTGCAGATTCAATTATTGTTTGTGTTATTCATCGGTACTATCAAAACAAAGATAT 120 consensus_3204#0 ----------CCGCGGACGCGTGGGTGCACAGCGGATTTGGCGGCTTGCATCCGTATCAG 50 consensus_3204#1 AAAAAGTCATCCAAAAAGCTGAGCAAACTCACTCAATTACTAAGTCCAAAGCGGTATCGT 180 ** * * * * ** *** * * * ***** consensus_3204#0 CCTAACGTCTCTAACGGTCTCTTTCTCCTTCGCCTTTCAGTTATGACGGATAATGCCTTC 110 consensus_3204#1 CCAAAC-CATTTACCGTGCACAATGATCGATAC-----AGTTATGACGGATAATGCCTTC 234 ** *** * ** ** * * * * * ********************** consensus_3204#0 AAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAA 170 consensus_3204#1 AAAGCGAAGGACATTGGGCTGCGGGCGCAGAAGAAAATCCTCTCCCGGATGGCAAGCAAA 294 ************************************************************ consensus_3204#0 AATGTGGCTAAAGTGTTCATCGACGGTACGACCGCGTCCCTTCTAGACAACGTGTACCGG 230 consensus_3204#1 AATGTGGCTAAAGTGTTCATCGACGATACGACCGCGTCCCTTCTAGACAACGTTTACCGA 354 ************************* *************************** ***** consensus_3204#0 TTGGTAAAGGTGCATACCGGCAGCAAAAAGGATGCGGAACGATTGGTTAAGAACATCATC 290 consensus_3204#1 TTGGTAAAGGTGCATACCGGCAGTAAAAAGGATGCGGAACGATTGGTTAAGAACATCATC 414 *********************** ************************************ consensus_3204#0 AAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTG 350 consensus_3204#1 AAAATCGTGATCAAAATTGCCGTCCTGCACCGGAACGGGCAGCTGAATGCGGACGAGCTG 474 ************************************************************ consensus_3204#0 CGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATTCTGTCCTTC 410 consensus_3204#1 CGCCAGGCGGACCGGTTCCGCACCAAGTTCCAAACGCTCCAGATGGCGATCCTGTCCTTC 534 ************************************************** ********* consensus_3204#0 TACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGC 470 consensus_3204#1 TACGAGGTGGACTACAGCTTCGATCTCAACTATCTGCAGAAATCGCTCGCCGACTGCCGC 594 ************************************************************ consensus_3204#0 AGCCTGTTGCGTTCGTGCGTGGTGCGCCACCTGACGGACAAATCGCTCGGCCGCATTGAC 530 consensus_3204#1 AGCCTGTTGCGCTCGTG------------------------------------------- 611 *********** ***** consensus_3204#0 GAGGTGTTTGACACGTTCGCTGACTCCGCCCTGCTCGAGACGGCCTTCCGGCAGGACTCG 590 consensus_3204#1 ------------------------------------------------------------ consensus_3204#0 CCGTACCGGGAAATCATGGACAAGATAGTGGTCGATCTGAACAAAGCGATGGAGAATGGA 650 consensus_3204#1 ------------------------------------------------------------ consensus_3204#0 GACATTTAATGCTGGGGGAAATTCCTTGGCTCCGTCTGCATGCAAGTTGCTCTCGAAAGA 710 consensus_3204#1 ------------------------------------------------------------ consensus_3204#0 AGAAGAAACAAAAAGTCGAACAAAAAGATGTCTTTCATCTGCTGCCAGCGACGAAG 766 consensus_3204#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||