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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence
[CAGAATCGCCACGANNNTAATCTTCCAGCACCTGCAGAGCTGTCGATCCGTACCGGCTGGACAATCTCGACTCGTACTCGAATCTGCTGTTCGTGAAGGATATGAAAACAGAAATGTCCCATCTGGCCCACAAGGTGGTGGAGATCAACAAGTACAGCCCCGAGACGTGCTGCGTGGTGGGCAACTATTACAGCATACGGTCCGATCACTACAAAGCTGTGATGTATTTCCAACGGGCGCTCAAGCTGAACCCGCGCTACCTGTCCGCCTGGACGCTGATGGGGCACGAGTTTATGGAGATGAAAAATACGAACGCGGCTATCCAAAGCTACCGCCAAGCGGTCGAGGTTAACAAACGCGACTTTCGCGCGTGGTACGGGCTGGGCCAGGCGTACGAAATACTAAAAATGACCTTCTACAGCCTGTACTACTACAAAGCGGCCAGCAGCTCCGTACCGTACGATAGCCGCATGCTGGTGGCGCTGGGCGAAACGTACGAAAAGCTGAACAAGGTAGCCGATGCCCTCAAGTGCTACCAGAAAGCGTACAACGTGGGCGATATCGAGGGCGTGGCACTGTACAGTATGGCCAAAGCTGTACGNAACAAGGCAGGGCGGAAAACCGAAAAAAAGCCATACCCTGACGTTCTTGAAGGTTTCTGCTCGGACGAGAAGCTTCATCGCCCAGAACCAACGGCCTTTCCGNGCATNCTTGACCAACGGCCGGTTTACCACTTNGAANCGCATNCGGGGCNCAAATNTGAATTTAACGCNGAAGCAAGCAGATTCTGGGAAAAGAAACCGTTCCGNAAACAAAGAGGCCGGTCANGCAAACATTTGGNGCNGNTAACCACAAANTTGGCTTTTGGGAACTTAAGCAGAAGGGGAAGAGATTTGAAAACACGGCGAAAAGCCCCGAAAATCGC]
[+] EMBL BX467292 [CAGAATCGCCACGANNNTAATCTTCCAGCACCTGCAGAGCTGTCGATCCGTACCGGCTGGACAATCTCGACTCGTACTCGAATCTGCTGTTCGTGAAGGATATGAAAACAGAAATGTCCCATCTGGCCCACAAGGTGGTGGAGATCAACAAGTACAGCCCCGAGACGTGCTGCGTGGTGGGCAACTATTACAGCATACGGTCCGATCACTACAAAGCTGTGATGTATTTCCAACGGGCGCTCAAGCTGAACCCGCGCTACCTGTCCGCCTGGACGCTGATGGGGCACGAGTTTATGGAGATGAAAAATACGAACGCGGCTATCCAAAGCTACCGCCAAGCGGTCGAGGTTAACAAACGCGACTTTCGCGCGTGGTACGGGCTGGGCCAGGCGTACGAAATACTAAAAATGACCTTCTACAGCCTGTACTACTACAAAGCGGCCAGCAGCTCCGTACCGTACGATAGCCGCATGCTGGTGGCGCTGGGCGAAACGTACGAAAAGCTGAACAAGGTAGCCGATGCCCTCAAGTGCTACCAGAAAGCGTACAACGTGGGCGATATCGAGGGCGTGGCACTGTACAGTATGGCCAAAGCTGTACGNAACAAGGCAGGGCGGAAAACCGAAAAAAAGCCATACCCTGACGTTCTTGAAGGTTTCTGCTCGGACGAGAAGCTTCATCGCCCAGAACCAACGGCCTTTCCGNGCATNCTTGACCAACGGCCGGTTTACCACTTNGAANCGCATNCGGGGCNCAAATNTGAATTTAACGCNGAAGCAAGCAGATTCTGGGAAAAGAAACCGTTCCGNAAACAAAGAGGCCGGTCANGCAAACATTTGGNGCNGNTAACCACAAANTTGGCTTTTGGGAACTTAAGCAGAAGGGGAAGAGATTTGAAAACACGGCGAAAAGCCCCGAAAATCGC]
consensusID : consensus_322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 896 fasta sequence
[AAGAATCGCCACGAGGTGACATCTTCCAGCACCTGCAGAGTGTCGATCCGTACCGACTGGACAATCTTGACTCGTACTCGAATCTGCTGTTCGTAAAGGATATGAAAACGGAAATGTCCCATCTGGCCCACAAGGTGGTGGAGATCAACAAGTACAGCCCCGAGACGTGCTGCGTGGTGGGCAACTATTACAGCATACGGTCCGATCACTACAAAGCAGTGATGTATTTCCAACGGGCGCTCAAGCTGAACCCGCGCTACCTGTCCGCCTGGACGCTGATGGGGCACGAGTTTATGGAGATGAAAAATACGAACGCGGCTATCCAAAGCTACCGCCAAGCGGTCGAGGTTAACAAACGCGACTTTCGCGCGTGGTACGGGCTGGGCCAGGCGTACGAAATACTAAAAATGACCTTCTACAGCCTGTACTACTACAAAGCGGCCCAGCAGCTCCGTCCGTACGATAGCCGCATGCTGGTGGCGCTGGGCGAAACGTACGAAAAGCTGAACAAGGTAGCCGATGCCCTCAAGTGCTACCAGAAAGCGTACAACGTGGGCGAGTATCGAGGGTGTGGCACTGTACAGTATGGCCAAAGCTGTACGGAAAAGCAGGGNCGGAAACCGGAAAAAGCCATCCCTGCGTTCTTGAAGTTCTGCTCGGACGAGAAGCTCATCGGCCGACGAAGGCTTCGCTCTGGCCACGCGTACATGACGCTCGGCAATTATTACGAAAAAATCGAAGGAGCCTCNGACCAAAAAGCGTTCAATACTTTTGGCGGTTACCCAAAATTGNNCTTGGGANCGTAACGGAACGGAAGGATTAAANCCCGGGAAAGGCCCGAGAATTCGGNTANGGCTTGGAAAAAAACGGCANTGGGNAANACGAAAGGCGGNTGG]
[+] EMBL BX468110 [AAGAATCGCCACGAGGTGACATCTTCCAGCACCTGCAGAGTGTCGATCCGTACCGACTGGACAATCTTGACTCGTACTCGAATCTGCTGTTCGTAAAGGATATGAAAACGGAAATGTCCCATCTGGCCCACAAGGTGGTGGAGATCAACAAGTACAGCCCCGAGACGTGCTGCGTGGTGGGCAACTATTACAGCATACGGTCCGATCACTACAAAGCAGTGATGTATTTCCAACGGGCGCTCAAGCTGAACCCGCGCTACCTGTCCGCCTGGACGCTGATGGGGCACGAGTTTATGGAGATGAAAAATACGAACGCGGCTATCCAAAGCTACCGCCAAGCGGTCGAGGTTAACAAACGCGACTTTCGCGCGTGGTACGGGCTGGGCCAGGCGTACGAAATACTAAAAATGACCTTCTACAGCCTGTACTACTACAAAGCGGCCCAGCAGCTCCGTCCGTACGATAGCCGCATGCTGGTGGCGCTGGGCGAAACGTACGAAAAGCTGAACAAGGTAGCCGATGCCCTCAAGTGCTACCAGAAAGCGTACAACGTGGGCGAGTATCGAGGGTGTGGCACTGTACAGTATGGCCAAAGCTGTACGGAAAAGCAGGGNCGGAAACCGGAAAAAGCCATCCCTGCGTTCTTGAAGTTCTGCTCGGACGAGAAGCTCATCGGCCGACGAAGGCTTCGCTCTGGCCACGCGTACATGACGCTCGGCAATTATTACGAAAAAATCGAAGGAGCCTCNGACCAAAAAGCGTTCAATACTTTTGGCGGTTACCCAAAATTGNNCTTGGGANCGTAACGGAACGGAAGGATTAAANCCCGGGAAAGGCCCGAGAATTCGGNTANGGCTTGGAAAAAAACGGCANTGGGNAANACGAAAGGCGGNTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_322#0 CAGAATCGCCACGANNNTA-ATCTTCCAGCACCTGCAGAGCTGTCGATCCGTACCGGCTG 59
consensus_322#1 AAGAATCGCCACGAGGTGACATCTTCCAGCACCTGCAGAG-TGTCGATCCGTACCGACTG 59
************* * ******************** *************** ***
consensus_322#0 GACAATCTCGACTCGTACTCGAATCTGCTGTTCGTGAAGGATATGAAAACAGAAATGTCC 119
consensus_322#1 GACAATCTTGACTCGTACTCGAATCTGCTGTTCGTAAAGGATATGAAAACGGAAATGTCC 119
******** ************************** ************** *********
consensus_322#0 CATCTGGCCCACAAGGTGGTGGAGATCAACAAGTACAGCCCCGAGACGTGCTGCGTGGTG 179
consensus_322#1 CATCTGGCCCACAAGGTGGTGGAGATCAACAAGTACAGCCCCGAGACGTGCTGCGTGGTG 179
************************************************************
consensus_322#0 GGCAACTATTACAGCATACGGTCCGATCACTACAAAGCTGTGATGTATTTCCAACGGGCG 239
consensus_322#1 GGCAACTATTACAGCATACGGTCCGATCACTACAAAGCAGTGATGTATTTCCAACGGGCG 239
************************************** *********************
consensus_322#0 CTCAAGCTGAACCCGCGCTACCTGTCCGCCTGGACGCTGATGGGGCACGAGTTTATGGAG 299
consensus_322#1 CTCAAGCTGAACCCGCGCTACCTGTCCGCCTGGACGCTGATGGGGCACGAGTTTATGGAG 299
************************************************************
consensus_322#0 ATGAAAAATACGAACGCGGCTATCCAAAGCTACCGCCAAGCGGTCGAGGTTAACAAACGC 359
consensus_322#1 ATGAAAAATACGAACGCGGCTATCCAAAGCTACCGCCAAGCGGTCGAGGTTAACAAACGC 359
************************************************************
consensus_322#0 GACTTTCGCGCGTGGTACGGGCTGGGCCAGGCGTACGAAATACTAAAAATGACCTTCTAC 419
consensus_322#1 GACTTTCGCGCGTGGTACGGGCTGGGCCAGGCGTACGAAATACTAAAAATGACCTTCTAC 419
************************************************************
consensus_322#0 AGCCTGTACTACTACAAAGCGGCC-AGCAGCTCCGTACCGTACGATAGCCGCATGCTGGT 478
consensus_322#1 AGCCTGTACTACTACAAAGCGGCCCAGCAGCTCCGT-CCGTACGATAGCCGCATGCTGGT 478
************************ *********** ***********************
consensus_322#0 GGCGCTGGGCGAAACGTACGAAAAGCTGAACAAGGTAGCCGATGCCCTCAAGTGCTACCA 538
consensus_322#1 GGCGCTGGGCGAAACGTACGAAAAGCTGAACAAGGTAGCCGATGCCCTCAAGTGCTACCA 538
************************************************************
consensus_322#0 GAAAGCGTACAACGTGGGCGA-TATCGAGGGCGTGGCACTGTACAGTATGGCCAAAGCTG 597
consensus_322#1 GAAAGCGTACAACGTGGGCGAGTATCGAGGGTGTGGCACTGTACAGTATGGCCAAAGCTG 598
********************* ********* ****************************
consensus_322#0 TACGNAACAAGGCAGGGCGGAAAACCGAAAAAAAGCCATACCCTGACGTTCTTGAAGGTT 657
consensus_322#1 TACGGAA--AAGCAGGGNCGGAAACCGGAAAAA-GCCAT-CCCTG-CGTTCTTGAAG--T 651
**** ** * ****** * ****** ***** ***** ***** *********** *
consensus_322#0 TCTGCTCGGACGAGAAGCTTCATCGCC--CAGAACCAACGGCCTTTCCGNGCATNCTTGA 715
consensus_322#1 TCTGCTCGGACGAGAAGCTCATCGGCCGACGAAGGCTTCGCTCTGGCCACGCGTACATGA 711
******************* *** * * * ** ** ** ** * * ***
consensus_322#0 CCAACGGCCGGTTTACCACTTNGAANCGCATNCGGGGCNCAAATNTGAATTTAACGCNGA 775
consensus_322#1 CGCTCGGCAA--TTATTACGAAAAAAT-CGAAGGAGCCTCNGACCAAAA---AGCGTTCA 765
* **** *** ** ** * * * * * * ** * ** *
consensus_322#0 AGCAAGCAGATTCTGGGAAAAGAAACCGTTCCGNAAACAAAGAGGCCGGTCANGCAAACA 835
consensus_322#1 ATACTTTTGGCGGTTACCCAAAATTGNNCTTGGGANCGTAACGGAACGGAAGGATTAAAN 825
* * * ** * * * * ** * *** **
consensus_322#0 TTTGGNGCNGNTAACCACAAANTTGGCTTTTGGGAACTTAAGCAGAAGGGGAAGAGATTT 895
consensus_322#1 CCCGGGAAAGGC--CCGAGAATTCGGNT----ANGGCTTGGAAAAAAACGGCANTGGGNA 879
** * ** ** * ** * *** * ** ** * *
consensus_322#0 GAAAACACGGCGAAAAGCCCCGAAAATCGC 925
consensus_322#1 ANACGAAAGGCGGNTGG------------- 896
* * **** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||