These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [CCGTGCTAAAATCTACTTCTGTTTTCCCACCTCTCACGTCTAATACGGCCAATTACGTTGCTGGCCCTTTGTAAATACCCTTTGCGTACCTGCCGTGGCTCGTCTGACTTGTACATCTTTCGCATAAACTACGGATTCCACCCACCCATTAGGCCGAAGTTACGTGGTAAGTATTCATCAACAACTATCGTCTTCATCGATCGGCCGGGAGGCTGGCCGACACTGTTAAACGGCCACTTTACGCCGGAACGAAGAACTCCATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCATCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTGCTCCCGAGTGTACCGCTCTGACCGTAACGTACATGTACCATACGCCCCGCCGCTTCTCTGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGAGGACGATCGCGATGTTCACGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAGCTTGGCCCGAATGCGGTAGACTCGATAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAACCGCGGTATTCTGAAGCGCGAACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCCTGAAACGATCACAAAACTCATGG] [+] EMBL BM627785 [CCGTGCTAAAATCTACTTCTGTTTTCCCACCTCTCACGTCTAATACGGCCAATTACGTTGCTGGCCCTTTGTAAATACCCTTTGCGTACCTGCCGTGGCTCGTCTGACTTGTACATCTTTCGCATAAACTACGGATTCCACCCACCCATTAGGCCGAAGTTACGTGGTAAGTATTCATCAACAACTATCGTCTTCATCGATCGGCCGGGAGGCTGGCCGACACTGTTAAACGGCCACTTTACGCCGGAACGAAGAACTCCATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCATCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTGCTCCCGAGTGTACCGCTCTGACCGTAACGTACATGTACCATACGCCCCGCCGCTTCTCTGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGAGGACGATCGCGATGTTCACGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAGCTTGGCCCGAATGCGGTAGACTCGATAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAACCGCGGTATTCTGAAGCGCGAACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCCTGAAACGATCACAAAACTCATGG] [-] EMBL BX618946 [ ATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCATCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTGCTCCCGAGTGTACCGCTCTGACCGTAACGCACATGTACCATACGCCCCGCCGCTCCTCTGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGTGGACGATCGCGATGTTCACGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAGCTTGGCCCGAATGCGGTAGACTCGACAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAACCGCGGTATTCTGAAGCGCGGACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCCTGAAACG ] consensusID : consensus_3220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [GGCGAACTCAGTGCTAACTCAACTCTGCGACCAGGCCTATGACGCGAACCCGTATCGAACCAACAACATTTTTCTTCACCACATGGTGACCGTAACAGTATAAACAAGTGCGCGTAAGCAATTGTCATATCGACTCAAATAAGTGCAACAAAAACAAAAAAGTTTCCTATTCGAAGCGCTTATGGGCCTGACGCGGTCTATCGCGATGTTCATGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGAATGCGGTAGATCCGACAGGCTTGGGTGGCATCCGCACACGTTTTCGGCGACCGCGGTATTCTGAANGCGCGGACGGACTTTGTTGATAATCGAAATATATTTGCGGTGCCTGAAACGATCACAAAACTCNTGGATTAATATAAATGTACCACG] [+] EMBL BX619175 [GGCGAACTCAGTGCTAACTCAACTCTGCGACCAGGCCTATGACGCGAACCCGTATCGAACCAACAACATTTTTCTTCACCACATGGTGACCGTAACAGTATAAACAAGTGCGCGTAAGCAATTGTCATATCGACTCAAATAAGTGCAACAAAAACAAAAAAGTTTCCTATTCGAAGCGCTTATGGGCCTGACGCGGTCTATCGCGATGTTCATGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGAATGCGGTAGATCCGACAGGCTTGGGTGGCATCCGCACACGTTTTCGGCGACCGCGGTATTCTGAANGCGCGGACGGACTTTGTTGATAATCGAAATATATTTGCGGTGCCTGAAACGATCACAAAACTCNTGGATTAATATAAATGTACCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3220#0 CCGTGCTAAAATCTACTTCTGTTTTCCCACCTCTCACGTCTAATACGGCCAATTACGTTG 60 consensus_3220#1 ------------------------------------------------------------ consensus_3220#0 CTGGCCCTTTGTAAATACCCTTTGCGTACCTGCCGTGGCTCGTCTGACTTGTACATCTTT 120 consensus_3220#1 ------------------------------------------------------------ consensus_3220#0 CGCATAAACTACGGATTCCACCCACCCATTAGGCCGAAGTTACGTGGTAAGTATTCATCA 180 consensus_3220#1 ------------------------------------------------------------ consensus_3220#0 ACAACTATCGTCTTCATCGATCGGCCGGGAGGCTGGCCGACACTGTTAAACGGCCACTTT 240 consensus_3220#1 ------------------------------------------------------------ consensus_3220#0 ACGCCGGAACGAAGAACTCCATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCA 300 consensus_3220#1 --GGCG-AACTCAGTGCTAACTCAACTCTGCGACCAGGCCTATGACGCGAACCCGTATCG 57 * ** *** ** ** *** ** * * * * ** ***** * * consensus_3220#0 TCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTG 360 consensus_3220#1 --AACCAACAACATTTTTCTTCACCACATG----GTGACCGTAACAGTATAAACAAG-TG 110 *** * * *** *** ** *** *** ** * * * ** consensus_3220#0 CTCCCGAGTG--TACCGCTCTGACCGTAACGTACATGTACCATACGCCCCGCCGCTTCTC 418 consensus_3220#1 CGCGTAAGCAATTGTCATATCGACTCAAA--TAAGTGCAACAAAAACAAAAAAGTTTC-C 167 * * ** * * *** ** ** ** * ** * * * *** * consensus_3220#0 TGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGAGGACGATCGCGATGTTCACGAA 478 consensus_3220#1 TAT-----------TCGAAGCGCTTATGGGCCTGACGCGGTCTATCGCGATGTTCATGAA 216 * * ************* ********* ** * ************* *** consensus_3220#0 TGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAG 538 consensus_3220#1 TGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGA----------------------- 253 ************************************* consensus_3220#0 CTTGGCCCGAATGCGGTAGACTCGATAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAA 598 consensus_3220#1 ----------ATGCGGTAGATCCGACAGGCTTGGGTGGCATCCGCACACGTTTTCGGCGA 303 ********** *** ********* ********************** * consensus_3220#0 CCGCGGTATTCTGAAG-CGCGAACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCC 657 consensus_3220#1 CCGCGGTATTCTGAANGCGCGGACGGACTTTGTTGATAATCGAAATATATTTGCGGTGCC 363 *************** **** ******** ****** ** * ***** ********** consensus_3220#0 TGAAACGATCACAAAACTCATGG-------------------- 680 consensus_3220#1 TGAAACGATCACAAAACTCNTGGATTAATATAAATGTACCACG 406 ******************* *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||