cluster # 3244

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Anopheles gambiae
cluster # 3244 cluster # 3244 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3244#0 length = 910 sequences # 2

consensus_3244#1 length = 606 sequences # 1

consensusID : consensus_3244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 910
fasta sequence

                              [CCGCCTTGTTGTGTGGCAAACTATTACAGTTTTCAGCGGTTTTATCTATAGGAAATTACAAATGTTGCTATAAGTACGATATTCAGTTAAATCCATTTGCCAACAGACAAGATTGTGACACTAACACTTACTTGAAGCGACATACATATCAATCATTGGTGAGTCAGCATCATCGCAAAGATAACACCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGATTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATATTTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACAACCGGAGTGAACCAGGGCGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCAGCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCAGCAGCTCCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAAAAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCGCTGTCGGCCACGAACACATCGAGAAAGTGGAGAAACATGCCTCCCAGAAGGATTACGTGTCCGGGTTCGGCGGTAAGTTTGGAGTGCAGAAAGATCGCGTTGATAAGTCAGCCCACGGATGGGACCACGTTGAGAAGGTTGACAAACACGAGTCGCAGAAAGATTACAAGACCGGCTTCGGAGGGAAGTTTGGAGTACAGCAGGACCGTCAAGATAAATCGGCGGTTGGGTGGGATCATATTGAAGCTCCACAGAAGCACGAAAGTCAAATCGATCACAAAGTGGGCTTCGGAGGAAAGTTTGGTGNTCAGA]

[+] EMBL BM599275             [CCGCCTTGTTGTGTGGCAAACTATTACAGTTTTCAGCGGTTTTATCTATAGGAAATTACAAATGTTGCTATAAGTACGATATTCAGTTAAATCCATTTGCCAACAGACAAGATTGTGACACTAACACTTACTTGAAGCGACATACATATCAATCATTGGTGAGTCAGCATCATCGCAAAGATAACACCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGATTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATATTTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACAACCGGAGTGAACCAGGGCGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCAGCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCAGCAGCTCCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAAAAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCGCTGTC                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX623398             [                                                                                                                                                                                          CCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGATTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATATTTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACTACCGGAGTGAACCAGGGCGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCAGCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCAGCAGCTCCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAAAAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCGCTGTCGGCCACGAACACATCGAGAAAGTGGAGAAACATGCCTCCCAGAAGGATTACGTGTCCGGGTTCGGCGGTAAGTTTGGAGTGCAGAAAGATCGCGTTGATAAGTCAGCCCACGGATGGGACCACGTTGAGAAGGTTGACAAACACGAGTCGCAGAAAGATTACAAGACCGGCTTCGGAGGGAAGTTTGGAGTACAGCAGGACCGTCAAGATAAATCGGCGGTTGGGTGGGATCATATTGAAGCTCCACAGAAGCACGAAAGTCAAATCGATCACAAAGTGGGCTTCGGAGGAAAGTTTGGTGNTCAGA]




>consensus_3244#0
CCGCCTTGTTGTGTGGCAAACTATTACAGTTTTCAGCGGTTTTATCTATAGGAAATTACA
AATGTTGCTATAAGTACGATATTCAGTTAAATCCATTTGCCAACAGACAAGATTGTGACA
CTAACACTTACTTGAAGCGACATACATATCAATCATTGGTGAGTCAGCATCATCGCAAAG
ATAACACCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGA
TTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATAT
TTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACAACCGGAGTGAACCAGGGC
GAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCAG
CGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCAG
CAGCTCCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAAAA
GCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCGCT
GTCGGCCACGAACACATCGAGAAAGTGGAGAAACATGCCTCCCAGAAGGATTACGTGTCC
GGGTTCGGCGGTAAGTTTGGAGTGCAGAAAGATCGCGTTGATAAGTCAGCCCACGGATGG
GACCACGTTGAGAAGGTTGACAAACACGAGTCGCAGAAAGATTACAAGACCGGCTTCGGA
GGGAAGTTTGGAGTACAGCAGGACCGTCAAGATAAATCGGCGGTTGGGTGGGATCATATT
GAAGCTCCACAGAAGCACGAAAGTCAAATCGATCACAAAGTGGGCTTCGGAGGAAAGTTT
GGTGNTCAGA

consensusID : consensus_3244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [CCGCGGACGCGTGGGTGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATTCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC]

[+] EMBL BM598412             [CCGCGGACGCGTGGGTGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATTCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC]




>consensus_3244#1
CCGCGGACGCGTGGGTGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGT
CGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCT
TCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGA
TCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCT
GCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGC
TGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATT
CCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCA
ACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAG
GTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCT
ACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGA
CTTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3244#0      CCGCCTTGTTGTGTGGCAAACTATTACAGTTTTCAGCGGTTTTATCTATAGGAAATTACA 60
consensus_3244#1      ------------------------------------------------------------
                                                                                  

consensus_3244#0      AATGTTGCTATAAGTACGATATTCAGTTAAATCCATTTGCCAACAGACAAGATTGTGACA 120
consensus_3244#1      ------------------------------------------------------------
                                                                                  

consensus_3244#0      CTAACACTTACTTGAAGCGACATACATATCAATCATTGGTGAGTCAGCATCATCGCAAAG 180
consensus_3244#1      ----------------------------------------------------CCGCGGAC 8
                                                                           ***  * 

consensus_3244#0      ATAACACCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGA 240
consensus_3244#1      GCGTGGGTGA-ACGACAAGAAGCGCACCCTG----GGTTCGGCCGAGATGAAGAAGTCGC 63
                              *  ****  *      ***** *    * *****   *  *  **   * * 

consensus_3244#0      TTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATAT 300
consensus_3244#1      TCAAGTACGACGATGTGG----TCGCCGTGTCCGCCGTCGAGCG-GTTCGGCGGCAACTT 118
                      *  * **  *   **       *  * ** ** * *  * ** * * * ** ** **  *

consensus_3244#0      -TTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACAACCGGAGTGAACCAGGG 359
consensus_3244#1      CTTCGTGCTGCAGAACTACGCC-CAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCT 177
                       ***    **  *** *   *  ***     ***   **   *   * **     **   

consensus_3244#0      CGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCA 419
consensus_3244#1      CGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCG 237
                      ***   ** ** * * *        ** * * *   * ***  *    ***** *  ** 

consensus_3244#0      GCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCA 479
consensus_3244#1      TCTGCTAT-CTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCA-CCGCCTCCGACATGCA 295
                       *       **        * *            **    *** * **   *** *****

consensus_3244#0      GCAGCT-CCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAA 538
consensus_3244#1      GGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTA-----GTCCTC 350
                      *  *** **** **  **   ***  *  *   *     * **   * *     * **  

consensus_3244#0      AAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCG 598
consensus_3244#1      GACCAACATTCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATC 410
                       * ** *   * *    ***      **  *   *** *  **   * **  **      

consensus_3244#0      CTGTCGGCCACGAACACATCGAGAAAGTGGAGAAACATGCCTCCCAGAAGGATTACGTGT 658
consensus_3244#1      GCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAG-TCGCAGGCGGACGGTCCAT 469
                          *  ***  * **   *  *  ** * ** *       ** ***  ***       *

consensus_3244#0      CCGGGTTCGGCGGTAAGTTTGGAGTGCAGAAAGATCGCGTTGATAAGTCAGCCCACGGAT 718
consensus_3244#1      AGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACG--AAATAGACGTACAACAAGG 527
                         *       *    * * * ** * *    *    **   *  ** *   * **    

consensus_3244#0      GGGACCACGTTGAGAAGGTTGACAAACACGAGTCGCAGAAAGATTACAAGACCGGCTTCG 778
consensus_3244#1      CAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAA 587
                            *  **          **     * * *   *  *   *     * * *  **  

consensus_3244#0      GAGGGAAGTTTGGAGT-ACAGCAGGACCGTCAAGATAAATCGGCGGTTGGGTGGGATCAT 837
consensus_3244#1      TAAAGTAATGTGACTTTAC----------------------------------------- 606
                       *  * * * **   * **                                         

consensus_3244#0      ATTGAAGCTCCACAGAAGCACGAAAGTCAAATCGATCACAAAGTGGGCTTCGGAGGAAAG 897
consensus_3244#1      ------------------------------------------------------------
                                                                                  

consensus_3244#0      TTTGGTGNTCAGA 910
consensus_3244#1      -------------