These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1186 fasta sequence [CCGCGGACGCGTGGGCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTACTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAGAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGTGTCGTCCAGTGCCTTCTTCGAGTTCATTCCGTTCTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTC] [+] EMBL BM575590 [CCGCGGACGCGTGGGCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTACTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAGAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGT ] [+] EMBL BM592635 [ CCGGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGTGTCGTCCAGTGCCTTCTTCGAGTTCATTCCGTTCTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTC] consensusID : consensus_3254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TTTTTTTTCATTGCTTCCATTATTTATTTCCAATTTTTCTGTATCCATTTCCTCTTCTTTCTATTGGCTGTTTTCGTTCAATACAGCTCCCGCACGGGACCTTCTCTCAGCTGATCGGTGTATTCCAATACATGATGTACCCTCTCTCTCTCTCTCTCTCGCTCCTCTTATTTAGTGATGGCGCGCTTCTTAAATTAGCTGGAAAAAAAATACTTTTGTGGTAAGAAAATGGCTCACACACACAATCTTCTTCCTTGCTATTGTTTTGTTATGATGGCGTGTGGAGGTCGCTCAATTAACGAGAGAGGTCCGTGTATGGTTGGTGGTTTGTAAAAAGGTAAACGACGACGCTCTAAGGCACCTTAACAATTTGTATCGTTCGTTATACTCCTCCTTTGCTTATTTCCTTTTCCTTCTCACTACACAAAAAAGCTGCATTTTCTCTTCTACTTTCCATTGCATTTTCTTTTCATTTTCAAACGGTTACTTTTGAAAATAGTTGTTGTTGTTGTTANATTGCTCTCTCTCTCCCTAACTCCCTTCCTT] [+] EMBL AGA284066 [TTTTTTTTCATTGCTTCCATTATTTATTTCCAATTTTTCTGTATCCATTTCCTCTTCTTTCTATTGGCTGTTTTCGTTCAATACAGCTCCCGCACGGGACCTTCTCTCAGCTGATCGGTGTATTCCAATACATGATGTACCCTCTCTCTCTCTCTCTCTCGCTCCTCTTATTTAGTGATGGCGCGCTTCTTAAATTAGCTGGAAAAAAAATACTTTTGTGGTAAGAAAATGGCTCACACACACAATCTTCTTCCTTGCTATTGTTTTGTTATGATGGCGTGTGGAGGTCGCTCAATTAACGAGAGAGGTCCGTGTATGGTTGGTGGTTTGTAAAAAGGTAAACGACGACGCTCTAAGGCACCTTAACAATTTGTATCGTTCGTTATACTCCTCCTTTGCTTATTTCCTTTTCCTTCTCACTACACAAAAAAGCTGCATTTTCTCTTCTACTTTCCATTGCATTTTCTTTTCATTTTCAAACGGTTACTTTTGAAAATAGTTGTTGTTGTTGTTANATTGCTCTCTCTCTCCCTAACTCCCTTCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3254#0 CCGCGGACGCGTGGGCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCG 60 consensus_3254#1 ----------------------------------TTTTTTTTCATTGCTTCCATTATTTA 26 ** ** * *** * * * consensus_3254#0 CTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAG--GACTTCATCGACTACG 118 consensus_3254#1 TTT-CCAATTTTTCTGTATCCATTTCCTCTTCTTTCTATTGGCTGTTTTCGTTCAATACA 85 * ** ** ** * * * * * * * * * *** * * *** consensus_3254#0 CCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCG 178 consensus_3254#1 GCTCCCGCACGGGAC-CTTCTCTCAGC----TGATCGGTGTATTCCAATACATGATGTAC 140 ** ** * * * * * **** * *** * * * ** * consensus_3254#0 CCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCG 238 consensus_3254#1 CCTCTCTCTCTCTCTCTCTCGCTCCTCTTATTTAGTGATGGCGCGCTTCTTAAATTAGCT 200 **** * * * ** *** ** * *** * *** consensus_3254#0 TGAAGAATGTCAAGTTTGTACTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGA 298 consensus_3254#1 GGAAAAAAAATACTTTTGTGGTAAGAAAATGGCTCACACAC-ACAATCTT--CTTCCTTG 257 *** ** * ***** * * ** * ** ** * * ***** consensus_3254#0 CCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACA 358 consensus_3254#1 CTATTGTTTTGTTAT----GATGGCGTGTGGAGGTCGCTC-AATTAACGAGAGAGGTCCG 312 * * ** * ** * * ** *** * * ** * consensus_3254#0 ACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGC 418 consensus_3254#1 TGTATGGTTGGTGGTTTGT--AAAAAGGTAAACGACGACGCT--CTAAGGCACCTTA--- 365 ** * * ** ** * * * * * * *** * *** * * consensus_3254#0 GCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGT 478 consensus_3254#1 ACAAT--TTGTATCG---TTCGTTATA-CTCCTCCTTTGCTTA---TTTCCTTTTCCTTC 416 *** * ** ** **** * * * * * ** ** **** ** * consensus_3254#0 TCGAGGGCAAGCAGCAGAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAG 538 consensus_3254#1 TCACTA-----CACAAAAAAGCTGCATTT-TCTCTTCTACTTTCCATTGC-ATTTTCTTT 469 ** ** * ** **** ** * * * * ** * ** * * * consensus_3254#0 TCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGTGTCGTCCAGTG 598 consensus_3254#1 TCATTTTCAAACGGTTACTTTTGAAAATA--GTTGTTGTTGTTGT-TANATTGCTCTCT- 525 ** ** * ** **** * ** ** ** * * * * consensus_3254#0 CCTTCTTCGAGTTCATTCCGTTCTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGA 658 consensus_3254#1 CTCTCCCTAACTCCCTTCCTT--------------------------------------- 546 * ** * * * **** * consensus_3254#0 CTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAA 718 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 GCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGA 778 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 TCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGA 838 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 TGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTA 898 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 CTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCAT 958 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 CACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCAC 1018 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 CGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCA 1078 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 GCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGG 1138 consensus_3254#1 ------------------------------------------------------------ consensus_3254#0 ACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTC 1186 consensus_3254#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||