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Anopheles gambiae
cluster # 3261 cluster # 3261       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3261#0 length = 575 sequences # 1  
consensus_3261#1 length = 445 sequences # 1  
consensus_3261#2 length = 200 sequences # 1  

consensusID : consensus_3261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCCAGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCGAGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGCCGCGTGCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGCGCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATTCCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACAAGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATTTAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCTATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTGCTAATAAAATTATTC]

[+] EMBL BM576958             [CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCCAGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCGAGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGCCGCGTGCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGCGCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATTCCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACAAGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATTTAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCTATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTGCTAATAAAATTATTC]


>consensus_3261#0 CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCC AGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCG AGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGCCGCGTG CGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGCG CGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATTC CGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACAA GGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATTT AGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCTA TATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCCC TAAATCTACTACTTTTATTGCTAATAAAATTATTC



consensusID : consensus_3261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence
                              [ATTCTACCGGTTCCATCGTCCCCGGAAGCACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAAAGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTTTCGCTACAAATTCTCCGCATACAACACGACGGCGTCTGGAATGATGCTAACCCCGTGGTCCGACTCCCCCGGTAATCGAGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGGCCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATACGCTTTTAACGCCACTAAGCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGCACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGCAC]

[+] EMBL CNS09FWD             [ATTCTACCGGTTCCATCGTCCCCGGAAGCACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAAAGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTTTCGCTACAAATTCTCCGCATACAACACGACGGCGTCTGGAATGATGCTAACCCCGTGGTCCGACTCCCCCGGTAATCGAGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGGCCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATACGCTTTTAACGCCACTAAGCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGCACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGCAC]


>consensus_3261#1 ATTCTACCGGTTCCATCGTCCCCGGAAGCACATTGTCCGCTCATGAGGGCTTTATTCGGG AATGGAATGTAACACTCGGTTTTCCAAAAAGCAAACGGCTTGAGCAAACAACACCGCGCG TTTATGGCAGCATGAAAATGAACAGATTTTCGCTACAAATTCTCCGCATACAACACGACG GCGTCTGGAATGATGCTAACCCCGTGGTCCGACTCCCCCGGTAATCGAGGTCCTCCGCAC AGCTTTTGGTAGAAAGGTGGTACCGGCCGGGGGTTTACTTGGATCTCGCACGCATTTCCC TGCGCTTACGCTTTAACCTCCGCATACGCTTTTAACGCCACTAAGCTCTAATTTTTCACG GCAGCAAAAGACGATTTACGTCCGCACTGCACGAATTGATTGGATGAAAGAGCCAGTTGG CCAACAGTTCTCGAGGATTTCGCAC



consensusID : consensus_3261#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence
                              [CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTTGCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGCCGAGGTTGATAGTGTACCGGAAGTGCCATCGGACCTGCAGCAGCAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCTCCTGTGGATGACGCCGAACAACCTCTTCCCCCAAGTGGCGATGAA]

[+] EMBL BM645019             [CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTTGCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGCCGAGGTTGATAGTGTACCGGAAGTGCCATCGGACCTGCAGCAGCAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCTCCTGTGGATGACGCCGAACAACCTCTTCCCCCAAGTGGCGATGAA]


>consensus_3261#2 CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTTGCTCTCGTGCTATGCGTCGGTC TGGCCGTAGGGGCCGAGGTTGATAGTGTACCGGAAGTGCCATCGGACCTGCAGCAGCAAC TGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCTCCTGTGGATGACGCCGAACAACCTC TTCCCCCAAGTGGCGATGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3261#1      -------------------------------ATTCTACCGGTTCCATCGTCCCCGGAAGC 29
consensus_3261#2      ------------------------------------------------------------
consensus_3261#0      CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCC 60
                                                                                  

consensus_3261#1      ACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAA 89
consensus_3261#2      ------------------------------------------------------------
consensus_3261#0      AGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCG 120
                                                                                  

consensus_3261#1      AGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTT 149
consensus_3261#2      ----------------------CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTT 38
consensus_3261#0      AGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGC-CGCGT 179
                                                    *     ** *   ** *      *     *

consensus_3261#1      TCGCTACAAATTCTCCGCATACAACACGACGGCGT-CTGGAATGATGCTAACCCCGTGGT 208
consensus_3261#2      GCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGC-CGAGGTTGATAGTGTACCGGAAGT 97
consensus_3261#0      GCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGC 239
                       *            *  *        **  **    *  *    *   *   ** *  * 

consensus_3261#1      CCGACTCCCC-CGGTAATCG-AGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGG 266
consensus_3261#2      GCCATCGGAC-CTGCAGCAG-CAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCT 155
consensus_3261#0      GCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATT 299
                       *           *     *         **  *       *   ** *      *    

consensus_3261#1      CCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATA 326
consensus_3261#2      CCTGTGGATGACGCCGA----ACAACCTCTTCCCCCAAGTGGCGATGAA----------- 200
consensus_3261#0      CCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACA 359
                      **             **      *       *                *           

consensus_3261#1      CGCTTTTAACGCCACTAA-GCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGC 385
consensus_3261#2      ------------------------------------------------------------
consensus_3261#0      AGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATT 419
                                                                                  

consensus_3261#1      --ACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGC 443
consensus_3261#2      ------------------------------------------------------------
consensus_3261#0      TAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCT 479
                                                                                  

consensus_3261#1      AC---------------------------------------------------------- 445
consensus_3261#2      ------------------------------------------------------------
consensus_3261#0      ATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCC 539
                                                                                  

consensus_3261#1      ------------------------------------
consensus_3261#2      ------------------------------------
consensus_3261#0      CTAAATCTACTACTTTTATTGCTAATAAAATTATTC 575
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)