These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [CCGCCCACGCGTCCGGCCGATCAGACTGATCGATTTCGCGATACGTTTCTGTTGCGTTGGGTCTGAAATTTTCAAATCCCAAGGAACGCTTTTAAGAACCCATACTTGTGGCTGCTATAACGCGACCTCGCTACCTCGTTTGCTTAAGTGTAGAATAAAATAGTGCTGTACGTTTCGTTGCCAAACGCGTGTTGCGGTGTACCATCTAGGGAAAGTTTACGATCATCTTCCGTCGCTGTTGCAGATACAAGGCATTTAATTTGTGTTTTACGTGATTGATATGGTTAGACGCTATTTTGCAGTCGTATGTTAGTACGGTCGTGGCAGTAGTTGGTGGTGTGCAAGGTTTTCACAACCTGGTGTGTCTCGCGCTCGTTCTTTCTATAGTTCAAAAAGCCGCTGGTGTCGAGTAAGCTGAAATGCAAGCAACGGTCTCGGAGGGAAACGGTCAGGGACCCAACAGCAGTAGCAGCAGCACCGGCCACAATCACAGCTCTTCTCCGAAACTGCCGCCACCCGGCTCGTGGGCATCGCTGAAGGCAAACGTGATAAGATGGCGCGGCTCACGGAAACTGGTACTCGTCATCGTCGCCATCGCACTCCTGCTCGACAATATGCTGCTGGACCGTCGTTGTGCCAATCATTCCGGAGTTTCTTTACGACATCAGACACCCGGATGCACCGCTGGCCAGCTTTCCCAAGACTCCGCCGACCACACCGTGCGAGAAGGAGGTGACGACACCGTACAATGGTATCGACGTTACAACGCAAGGTTACGATAATGCTAGCTGGTACGCGGAACGGGAGGAACGGCACAAGGAGCTGGTGGAGGAAACGGTCGAGGTTGGGCTTATGTTTGCCTCGAAAGCATTCGTCC] [+] EMBL BM626367 [CCGCCCACGCGTCCGGCCGATCAGACTGATCGATTTCGCGATACGTTTCTGTTGCGTTGGGTCTGAAATTTTCAAATCCCAAGGAACGCTTTTAAGAACCCATACTTGTGGCTGCTATAACGCGACCTCGCTACCTCGTTTGCTTAAGTGTAGAATAAAATAGTGCTGTACGTTTCGTTGCCAAACGCGTGTTGCGGTGTACCATCTAGGGAAAGTTTACGATCATCTTCCGTCGCTGTTGCAGATACAAGGCATTTAATTTGTGTTTTACGTGATTGATATGGTTAGACGCTATTTTGCAGTCGTATGTTAGTACGGTCGTGGCAGTAGTTGGTGGTGTGCAAGGTTTTCACAACCTGGTGTGTCTCGCGCTCGTTCTTTCTATAGTTCAAAAAGCCGCTGGTGTCGAGTAAGCTGAAATGCAAGCAACGGTCTCGGAGGGAAACGGTCAGGGACCCAACAGCAGTAGCAGCAGCACCGGCCACAATCACAGCTCTTCTCCGAAACTGCCGCCACCCGGCTCGTGGGCATCGCTGAAGGCAAACGTGATAAGATGGCGCGGCTCACGGAAACTGGTACTCGTCATCGTCGCCATCGCACTCCTGCTCGACAATATGCTGCTGGACCGTCGTTGTGCCAATCATTCCGGAGTTTCTTTACGACATCAGACACCCGG ] [+] EMBL BM628654 [ ccgTTACGATCATCTTCCGTCGCTGTTGCAGATACAAGGCATTTAATTTGTGTTTTACGTGATTGATATGGTTAGACGCTATTTTGCAGTCGTATGTTAGTACGGTCGTGGCAGTAGTTGGTGGTGTGCAAGATTGTGA AA GGCGGTGTCTCGCGCTCGTTCTTTCTATAGTTCAAAAAGCCGCTGGTGTCGAGTAAGCTGAAATGCAAGCAACGGTCTCGGAGGGAAACGGTCAGGGACCCAACAGCAGTAGCAGCAGCACCGGCCACAATCACAGCTCTTCTCCGAAACTGCCGCCACCCGGCTCGTGGGCATCGCTGAAGGCAAACGTGATAAGATGGCGCGGCTCACGGAAACTGGTACTCGTCATCGTCGCCATCGCACTCCTGCTCGACAATATGCTGCT GACCGTCGTTGTGCCAATCATTCCGGAGTTTCTTTACGACATCAGACACCCGGATGCACCGCTGGCCAGCTTTCCCAAGACTCCGCCGACCACACCGTGCGAGAAGGAGGTGACGACACCGTACAATGGTATCGACGTTACAACGCAAGGTTACGATAATGCTAGCTGGTACGCGGAACGGGAGGAACGGCACAAGGAGCTGGTGGAGGAAACGGTCGAGGTTGGGCTTATGTTTGCCTCGAAAGCATTCGTCC] consensusID : consensus_3275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGCAGTGAGGCAGGCTCCTGGGTGAGTGCCGTTTCCGGTAGTGACGAATTTGCTGACTTCCATTTCAAGGAAGTAAACCACATACAGGCGACCTAATAAAACAGCGAACATTCGACGAAAAATTCCACAGAACCGCAGCCGTCGGGTATTCGAGCGGTACGGTACTGTCGCTAAGCTTCCGTTGCAAGATGAAGTGACATTGCTCCGCAGACTTCCGGTTCATTTGCGATCCCTCCCGTAGACCCACAACGCAACCGAATCATCCGCTGGTGTCGAGTAAGCTGAAATGCAAGCAACGGTCTCGGAGGGAAACGGTCAGGGACCCAACAGCAGTAGCAGCAGCACCGGCCACAATCACAGCTCTTCTCCGAAACTGCCGCCACCCGGCTCGTGGGCATCGCTGAAGGCAAACGTGATAAGATGGCGCGGCTCACGGAAACTGGTACTCGTCATCGTCGCCATCGCACTCCTGCTCGACAATATGCTGCTGACCGTCGTTGTGCCAATTATTCCGGAGTTTCTTTACGACATCAGACACCCGGATGCACCGCTGGCCAGCTTTCCCAAGACTCCGCCGACCACACCGTGCGAGAAGGAGGTGACGACACCGTACAATGGGCATCGACGTTACAACGCAAGGTT] [+] EMBL BM633786 [CCGCAGTGAGGCAGGCTCCTGGGTGAGTGCCGTTTCCGGTAGTGACGAATTTGCTGACTTCCATTTCAAGGAAGTAAACCACATACAGGCGACCTAATAAAACAGCGAACATTCGACGAAAAATTCCACAGAACCGCAGCCGTCGGGTATTCGAGCGGTACGGTACTGTCGCTAAGCTTCCGTTGCAAGATGAAGTGACATTGCTCCGCAGACTTCCGGTTCATTTGCGATCCCTCCCGTAGACCCACAACGCAACCGAATCATCCGCTGGTGTCGAGTAAGCTGAAATGCAAGCAACGGTCTCGGAGGGAAACGGTCAGGGACCCAACAGCAGTAGCAGCAGCACCGGCCACAATCACAGCTCTTCTCCGAAACTGCCGCCACCCGGCTCGTGGGCATCGCTGAAGGCAAACGTGATAAGATGGCGCGGCTCACGGAAACTGGTACTCGTCATCGTCGCCATCGCACTCCTGCTCGACAATATGCTGCTGACCGTCGTTGTGCCAATTATTCCGGAGTTTCTTTACGACATCAGACACCCGGATGCACCGCTGGCCAGCTTTCCCAAGACTCCGCCGACCACACCGTGCGAGAAGGAGGTGACGACACCGTACAATGGGCATCGACGTTACAACGCAAGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3275#0 CCGCCCACGCGTCCGGCCGATCAGACTGATCGATTTCGCGATACGTTTCTGTTGCGTTGG 60 consensus_3275#1 ------------------------------------------------------------ consensus_3275#0 GTCTGAAATTTTCAAATCCCAAGGAACGCTTTTAAGAACCCATACTTGTGGCTGCTATAA 120 consensus_3275#1 -----------------------------------------------------------C 1 consensus_3275#0 CGCGACCTCGCTACCTCGTTTGCTTAAGTGTAGAATAAAATAGTGCTGTACGTTTCGTTG 180 consensus_3275#1 CGCAGTGAGGCAGGCTC--CTGGGTGAGTGCCGTTTCCGGTAGTGACGAATTTGCTGACT 59 *** ** *** ** * **** * * ***** * * * * consensus_3275#0 CCAAACGCGTGTTGCGGTGTACCATCTAGGGAAAGTTTACGATCATCTTCCGTCGCTGTT 240 consensus_3275#1 TCCATTTCAAG--GAAGTAAACCACATACAGGCGACCTAATAAAACAGCGAACATTCGAC 117 * * * * * ** **** ** * ** * * * consensus_3275#0 GCAGA--TACAAGGCATTTAATTTGTGTTTTACGTGATTGATATGGT-TAGACGCTATTT 297 consensus_3275#1 GAAAAATTCCACAGAACCGCAGCCGTCGGGTATTCGAGCGGTACGGTACTGTCGCTAAGC 177 * * * * ** * * * ** ** ** * ** *** * ***** consensus_3275#0 TGCAGTCGTATGTTAGTACGGTCGTGGCAGTAGTTGGTGGTGTGCAAGGTTTTCACAACC 357 consensus_3275#1 TTCCGTTGCAAGATGAA------GTGACATTGCTCCGCAGACTTCCGGTTC------ATT 225 * * ** * * * * *** ** * * * * * * * * * consensus_3275#0 TGGTGTGTCTCGCGCTCGTTCTTTCTATAGTTCAAAAAGCCGCTGGTGTCGAGTAAGCTG 417 consensus_3275#1 TGCGATCCCTCCCGTAGACCCACAACGCAACCGAATCATCCGCTGGTGTCGAGTAAGCTG 285 ** * *** ** * * ** * ********************* consensus_3275#0 AAATGCAAGCAACGGTCTCGGAGGGAAACGGTCAGGGACCCAACAGCAGTAGCAGCAGCA 477 consensus_3275#1 AAATGCAAGCAACGGTCTCGGAGGGAAACGGTCAGGGACCCAACAGCAGTAGCAGCAGCA 345 ************************************************************ consensus_3275#0 CCGGCCACAATCACAGCTCTTCTCCGAAACTGCCGCCACCCGGCTCGTGGGCATCGCTGA 537 consensus_3275#1 CCGGCCACAATCACAGCTCTTCTCCGAAACTGCCGCCACCCGGCTCGTGGGCATCGCTGA 405 ************************************************************ consensus_3275#0 AGGCAAACGTGATAAGATGGCGCGGCTCACGGAAACTGGTACTCGTCATCGTCGCCATCG 597 consensus_3275#1 AGGCAAACGTGATAAGATGGCGCGGCTCACGGAAACTGGTACTCGTCATCGTCGCCATCG 465 ************************************************************ consensus_3275#0 CACTCCTGCTCGACAATATGCTGCTGGACCGTCGTTGTGCCAATCATTCCGGAGTTTCTT 657 consensus_3275#1 CACTCCTGCTCGACAATATGCTGCTG-ACCGTCGTTGTGCCAATTATTCCGGAGTTTCTT 524 ************************** ***************** *************** consensus_3275#0 TACGACATCAGACACCCGGATGCACCGCTGGCCAGCTTTCCCAAGACTCCGCCGACCACA 717 consensus_3275#1 TACGACATCAGACACCCGGATGCACCGCTGGCCAGCTTTCCCAAGACTCCGCCGACCACA 584 ************************************************************ consensus_3275#0 CCGTGCGAGAAGGAGGTGACGACACCGTACAATGG-TATCGACGTTACAACGCAAGGTTA 776 consensus_3275#1 CCGTGCGAGAAGGAGGTGACGACACCGTACAATGGGCATCGACGTTACAACGCAAGGTT- 643 *********************************** ********************** consensus_3275#0 CGATAATGCTAGCTGGTACGCGGAACGGGAGGAACGGCACAAGGAGCTGGTGGAGGAAAC 836 consensus_3275#1 ------------------------------------------------------------ consensus_3275#0 GGTCGAGGTTGGGCTTATGTTTGCCTCGAAAGCATTCGTCC 877 consensus_3275#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||