These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 899 fasta sequence [CCGTTTTAAATAAATATATGTAATTCCAAGCAAAAACAAATAAATGCTGCCACTGCGCGAGAATAGGGGGAAGGTACGCGATTCACGATTACACAACATTCATACAATCTGTTTTACACCGTATCAGTGAGCCACACGGATCATCCAGGCGGAGGTAGGAGTAAAGTGGGTGGTTTTTGCTACACGCGAGACGTTGCTTGTGCGGTTTCTTGTCGTGTAAGGAATAGCTTAATTGTTCATTTGTGGACTCCCCTCCCCCCACGTCTCTGTGGGAGCGAGAGAGAGAGAGAGAGGGGATTCCAATCGGGAGGACAAACTATTACCTGCTTAACAGTTGCCTCGTTTGGTACCACCGACCCCTCCACCCCCCCCCCCCCCAACTCTTTCGCAATCCAATAATCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAACGATGCTGCGAATTTCGGTACCGGAAATATTTAATTTAAAAGACCCGCCGAGGAGGGAAATCACAGGTCAGGCAGTAGGCGTGCGTAGGAAAAATAAGAAGAAAATCACACTACACACAAACAGGTGAAACAAAGGGAAGAATAAAAAAGACACACACACACACACACACCCACACATACAATCATTTATTGGTAAAACGAACGAACTGCGCAATAGTGTAAAATAACAATCATAATAGTGGTTTCGTTAATGACGTCAGATAAGATTGAATATTAATATAAAGGATAGCAAAAAAAACGAGTAAAGACAGAAAAGAGAGAGAGAGAGAGAGAGACACACACGGCACAGATTTGGACCTATAC] [+] EMBL BM625303 [CCGTTTTAAATAAATATATGTAATTCCAAGCAAAAACAAATAAATGCTGCCACTGCGCGAGAATAGGGGGAAGGTACGCGATTCACGATTACACAACATTCATACAATCTGTTTTACACCGTATCAGTGAGCCACACGGATCATCCAGGCGGAGGTAGGAGTAAAGTGGGTGGTTTTTGCTACACGCGAGACGTTGCTTGTGCGGTTTCTTGTCGTGTAAGGAATAGCTTAATTGTTCATTTGTGGACTCCCCTCCCCCCACGTCTCTGTGGGAGCGAGAGAGAGAGAGAGAGGGGATTCCAATCGGGAGGACAAACTATTACCTGCTTAACAGTTGCCTCGTTTGGTACCACCGACCCCTCCACCCCCCCCCCCCCCAACTCTTTCGCAATCCAATAATCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAACGATGCTGCGAATTTCGG ] [+] EMBL BX609566 [ AATAATCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAACGATGCTGCGAATTTCGGTACCGGAAATATTTAATTTAAAAGACCCGCCGAGGAGGGAAATCACAGGTCAGGCAGTAGGCGTGCGTAGGAAAAATAAGAAGAAAATCACACTACACACAAACAGGTGAAACAAAGGGAAGAATAAAAAAGACACACACACACACACACACCCACACATACAATCATTTATTGGTAAAACGAACGAACTGCGCAATAGTGTAAAATAACAATCATAATAGTGGTTTCGTTAATGACGTCAGATAAGATTGAATATTAATATAAAGGATAGCAAAAAAAACGAGTAAAGACAGAAAAGAGAGAGAGAGAGAGAGAGACACACACGGCACAGATTTGGACCTATAC] consensusID : consensus_3290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [ATTTCCCAATTCCGGGACGCGACCAAACCGTATTTACCCTGGCTTTACACCACGNTTGCTCGTTTTGGTACCCACCCGGACCCCCTCCATTCCCCCCCCCCCCACCCAACTCTTTTCGCAATTCCAATAATTCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAAAAAAAAAAAAAACCTCTCGTGCCGNNTTCGTTGCCTCG] [-] EMBL BX468281 [ATTTCCCAATTCCGGGACGCGACCAAACCGTATTTACCCTGGCTTTACACCACGNTTGCTCGTTTTGGTACCCACCCGGACCCCCTCCATTCCCCCCCCCCCCACCCAACTCTTTTCGCAATTCCAATAATTCGTAGCGTACGCGCAACACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCGGGAAAAAAAAAAAAAAAACCTCTCGTGCCGNNTTCGTTGCCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3290#0 CCGTTTTAAATAAATATATGTAATTCCAAGCAAAAACAAATAAATGCTGCCACTGCGCGA 60 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 GAATAGGGGGAAGGTACGCGATTCACGATTACACAACATTCATACAATCTGTTTTACACC 120 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 GTATCAGTGAGCCACACGGATCATCCAGGCGGAGGTAGGAGTAAAGTGGGTGGTTTTTGC 180 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 TACACGCGAGACGTTGCTTGTGCGGTTTCTTGTCGTGTAAGGAATAGCTTAATTGTTCAT 240 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 TTGTGGACTCCCCTCCCCCCACGTCTCTGTGGGAGCGAGAGAGAGAGAGAGAGGGGATTC 300 consensus_3290#1 -------------------------ATTTCCCAATTCCGGGACGCGACCAAACCGTATTT 35 * * * ** * * * *** consensus_3290#0 CAATCGGGAGGACAA-ACTATTACCTGCTTAACAGTTGCCTCGTTTGGTACCACCGACCC 359 consensus_3290#1 ACCCTGGCTTTACACCACGNTTGCTCGTTT--TGGTA--CCCACCCGG-ACCCCC--TCC 88 ** *** ** ** * * ** ** * * ** *** ** ** consensus_3290#0 CTCCACCCCCCCCCCCCCCAACTCTTT-CGCAAT-CCAATAAT-CGTAGCGTACGCGCAA 416 consensus_3290#1 ATTCCCCCCCCCCCCACCCAACTCTTTTCGCAATTCCAATAATTCGTAGCGTACGCGCAA 148 * * ********** *********** ****** ******** **************** consensus_3290#0 CACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCG 476 consensus_3290#1 CACATATCTCCGGAAGTTAAATGGTCCGCATTGGTTTATATGTTTGCTCGTTTCGGTTCG 208 ************************************************************ consensus_3290#0 GGAAAGGAGGAGAAAAGAAACACGGCAAAACTGTGAGGAAGGGGATGGCGGGCGTGTCAA 536 consensus_3290#1 GGAAAAAA--AAAAAAAAAACCT------CTCGTGCCGNNTTCGTTGCCTCG-------- 252 ***** * * **** **** *** * * ** * * consensus_3290#0 CGATGCTGCGAATTTCGGTACCGGAAATATTTAATTTAAAAGACCCGCCGAGGAGGGAAA 596 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 TCACAGGTCAGGCAGTAGGCGTGCGTAGGAAAAATAAGAAGAAAATCACACTACACACAA 656 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 ACAGGTGAAACAAAGGGAAGAATAAAAAAGACACACACACACACACACACCCACACATAC 716 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 AATCATTTATTGGTAAAACGAACGAACTGCGCAATAGTGTAAAATAACAATCATAATAGT 776 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 GGTTTCGTTAATGACGTCAGATAAGATTGAATATTAATATAAAGGATAGCAAAAAAAACG 836 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 AGTAAAGACAGAAAAGAGAGAGAGAGAGAGAGAGACACACACGGCACAGATTTGGACCTA 896 consensus_3290#1 ------------------------------------------------------------ consensus_3290#0 TAC 899 consensus_3290#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||