These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 972 fasta sequence [CCGGCGAGCGACGACACTACCAGCAGCAGCAACAACGTAAACAACAACGCTTATTCCACAGTGAAGTGCCCCTGCTAGCCCTGTTCCGATCGTGGCACAACGTGTGTGATACTGTTTGTGTGCGCGCTGTGACGACAGAACGCGTGAAGGAACAGCAACAGCACGCATTTTCCACGCCTTTTCCGATGTCGTGCAGTTGAGCTTCTGTTCGCAGTTGGTGGCTGCGCTGCAGTGTGCGGCGTCTGTGTGCGTGTTGGTGAATTTTATGTTTAGTGTTTGCGTTTGTTTTGCGTTTCGCTCGCAGCAGCGTGGTTTTCGGTTGCGGTTTTAGTTATTTCTACGCCGCGGCAATAGCCAACTTTTCGTGCCCACCAGAAGGGCGTATGTGTGTATGTAAAGTGTTTACGTGAGAATTCAGTGAGCAAAGTGTTGTCTAGTGGGATGCAATGTAAAAGAAAGCTCTCATAGAGCCACCGAAAATCAAACCGCGGAAAGTTTTAAGTTTCATAGCAGCTCCAACGCAAAGTTCAGTGTATGTTCTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACTTGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAACGTGTGTGTTTGCGTGTGAGTGCCTCCTCTCCCCACTATCTCTGTAAAACCTCCCTCACATACCCTCCCCCCCCACCCCCCTCAACTCGGTGGCATAACACGTGGTCAAGGTGGAGCACGGTACGACAACAGGGGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAGTGGCGGCAGCAGCAGCCTCCGGCAACGTGGTTTGCGATAAGGTGCTCAACCTGATCAACAACAACAACAACAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGGCGACTCGCGCAAACGGCCCCTG] [+] EMBL BM625143 [CCGGCGAGCGACGACACTACCAGCAGCAGCAACAACGTAAACAACAACGCTTATTCCACAGTGAAGTGCCCCTGCTAGCCCTGTTCCGATCGTGGCACAACGTGTGTGATACTGTTTGTGTGCGCGCTGTGACGACAGAACGCGTGAAGGAACAGCAACAGCACGCATTTTCCACGCCTTTTCCGATGTCGTGCAGTTGAGCTTCTGTTCGCAGTTGGTGGCTGCGCTGCAGTGTGCGGCGTCTGTGTGCGTGTTGGTGAATTTTATGTTTAGTGTTTGCGTTTGTTTTGCGTTTCGCTCGCAGCAGCGTGGTTTTCGGTTGCGGTTTTAGTTATTTCTACGCCGCGGCAATAGCCAACTTTTCGTGCCCACCAGAAGGGCGTATGTGTGTATGTAAAGTGTTTACGTGAGAATTCAGTGAGCAAAGTGTTGTCTAGTGGGATGCAATGTAAAAGAAAGCTCTCATAGAGCCACCGAAAATCAAACCGCGGAAAGTTTTAAGTTTCATAGCAGCTCCAACGCAAAGTTCAGTGTATGTTCTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACTTGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAAC ] [+] EMBL BM643242 [ ccgGTTCTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACTTGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAACGTGTGTGTTTGCGTGTGAGTGCCTCCTCTCCCCACTATCTCTGTAAAACCTCCCTCACATACCCTCCCCCCCCACCCCCCTCAACTCGGTGGCATAACACGTGGTCAAGGTGGAGCACGGTACGACAACAGGGGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAGTGGCGGCAGCAGCAGCCTCCGGCAACGTGGTTTGCGATAAGGTGCTCAACCTGATCAACAACAACAACAACAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGGCGACTCGCGCAAACGGCCCCTG] consensusID : consensus_3296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [AGGCAAGAATTCGGCACGTGGCTGATCAACAACAACAACAACCAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGTGCGACTCGCGCAAACGGCCCCTGGACGACGGTACGGACGATGGCACCTCCAAACGGTCACACTTCAGCACCAACGCTACGGGAACTACCACCGCCACCACTACCACAGCTACCAATGGCGGCGGAGACAACTATCACTTCAAGACGCTGGTACCGTCGGTCGCGGCCGGTGCCATCATCGGCAAGGGCGGCGAAACGATCGCCTCGCTACAGAAGGATGCCGGTGCCCGGGTGAAGATGTCCAAGGCGCACGACTTCTATCCCGGTACCANCGAGCGTATCTTGTCTCATTACGCGGCACGGTCGAGGGCATCCTGGCCCGTGCTCGAGTTTTATCACCGGGACAAGATACGCGA] [+] EMBL BX468868 [AGGCAAGAATTCGGCACGTGGCTGATCAACAACAACAACAACCAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGTGCGACTCGCGCAAACGGCCCCTGGACGACGGTACGGACGATGGCACCTCCAAACGGTCACACTTCAGCACCAACGCTACGGGAACTACCACCGCCACCACTACCACAGCTACCAATGGCGGCGGAGACAACTATCACTTCAAGACGCTGGTACCGTCGGTCGCGGCCGGTGCCATCATCGGCAAGGGCGGCGAAACGATCGCCTCGCTACAGAAGGATGCCGGTGCCCGGGTGAAGATGTCCAAGGCGCACGACTTCTATCCCGGTACCANCGAGCGTATCTTGTCTCATTACGCGGCACGGTCGAGGGCATCCTGGCCCGTGCTCGAGTTTTATCACCGGGACAAGATACGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3296#0 CCGGCGAGCGACGACACTACCAGCAGCAGCAACAACGTAAACAACAACGCTTATTCCACA 60 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 GTGAAGTGCCCCTGCTAGCCCTGTTCCGATCGTGGCACAACGTGTGTGATACTGTTTGTG 120 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 TGCGCGCTGTGACGACAGAACGCGTGAAGGAACAGCAACAGCACGCATTTTCCACGCCTT 180 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 TTCCGATGTCGTGCAGTTGAGCTTCTGTTCGCAGTTGGTGGCTGCGCTGCAGTGTGCGGC 240 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 GTCTGTGTGCGTGTTGGTGAATTTTATGTTTAGTGTTTGCGTTTGTTTTGCGTTTCGCTC 300 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 GCAGCAGCGTGGTTTTCGGTTGCGGTTTTAGTTATTTCTACGCCGCGGCAATAGCCAACT 360 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 TTTCGTGCCCACCAGAAGGGCGTATGTGTGTATGTAAAGTGTTTACGTGAGAATTCAGTG 420 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 AGCAAAGTGTTGTCTAGTGGGATGCAATGTAAAAGAAAGCTCTCATAGAGCCACCGAAAA 480 consensus_3296#1 ------------------------------------------------------------ consensus_3296#0 TCAAACCGCGGAAAGTTTTAAGTTTCATAGCAGCTCCAACGCAA-AGTTCAGTGTATGTT 539 consensus_3296#1 --------------------------------------AGGCAAGAATTCGGCACGTGGC 22 * **** * *** * ** consensus_3296#0 CTTTGTATAAATTTGACCATCCGTTTCTGTTAGTGTGGTGTGCTGAAGTGTAGCAGGACT 599 consensus_3296#1 TGATCAACAACAACAACAACCAGTA--TAATGGCAGCCGATGCCGCCATGGA-CACGACC 79 * * ** ** * * ** * * * *** * ** * ** *** consensus_3296#0 TGTCCCAACAAAAATCTTTGGAAGAAGTTACCCCAACAAGGCCACTCTTTGCTTTCAAAC 659 consensus_3296#1 TGTCCGAGCCCGGAACT--GGTGCGACTCGCGCAAACGGCCCCTGGACGACGGTACGGAC 137 ***** * * * ** ** * * * * *** ** * * ** consensus_3296#0 GTGTGTGTTTGCGTGTGAGTGCCTCCTCTCCCCACTATCTCTGTAAAACCTCCCTCACAT 719 consensus_3296#1 GATGGCACCTCCAAACG---GTCACACTTCAGCACCAACGCTACGGGAACTACCACCGCC 194 * * * * * * * * ** *** * * ** * ** ** * consensus_3296#0 ACCCTCCCCCCCCACCCCCCTCAACTCGGTGGCATAACACGTGGTCAAGGTGG-AGCACG 778 consensus_3296#1 ACCACTACCACAGCTACCAATGGCGGCGGAGACA-ACTATCACTTCAAGACGCTGGTACC 253 *** ** * ** * *** * ** * * ***** * * ** consensus_3296#0 GTACGACAACAGGGGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAGTGGCG-GCAGCAGCA 837 consensus_3296#1 GTCGGTCGCGGCCGGTGCCATCATCGGCAAGGGCGGCGAAACGATCGCCTCGCTACAGAA 313 ** * * ** * * * ***** ** ** * * * ** *** * consensus_3296#0 GCCTCCGGCAACGTGGTTTGCGAT----AAGGTGCTCAACCTGATCAACAACAACAACAA 893 consensus_3296#1 GGATGCCGGTGCCCGGGTGAAGATGTCCAAGGCGCACGACTTCTATCCCGGTACCANCGA 373 * * * * * ** * *** **** ** * ** * * * ** * * consensus_3296#0 CAGTATAATGGCAGCCGATGCCGCCATGGACACGACCTGTCCGAGCCCGGAACTGGGCGA 953 consensus_3296#1 GCGTATCTTGTCTCATTACGCGGC-ACGGTCGAGGGC-ATCCTGGCCCGTGCTCGAGTTT 431 **** ** * * ** ** * ** * * * *** ***** * * consensus_3296#0 C-TCGCGCAAACGGCCCCTG--- 972 consensus_3296#1 TATCACCGGGACAAGATACGCGA 454 ** * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||