These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence [CCGCTTCAACATGTCGAGAGGTGTACAAACGATTGTTCTCTCTTTCTTCCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAGATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGAAACGATGGTGCAGTATATCCCGGGAAACGGCCTGAATTGCAAGAAGAAGACAGCTAGTTGAGATAGAGTTTTAGATTTCAGACATCCCTTCACCGACTCCACCCGATTCTTCACTGGCATAACACAATCGTTAGTCTTAAGTTTAGCGGTAGAACCGTAACCTAAAAGGGTGTTCGGGACCCCCAACACCTTCCCCCCTCCTCCCCTGTCCTTTTGTGTGTAAGTT] [+] EMBL BM629879 [CCGCTTCAACATGTCGAGAGGTGTACAAACGATTGTTCTCTCTTTCTTCCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAGATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGAAACGATGGTGCAGTATA ] [+] EMBL BM644235 [ ccgcccacGCGTCCGCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAGATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGAAACGATGGTGCAGTATATCCCGGGAAACGGCCTGAATTGCAAGAAGAAGACAGCTAGTTGAGATAGAGTTTTAGATTTCAGACATCCCTTCACCGACTCCACCCGATTCTTCACTGGCATAACACAATCGTTAGTCTTAAGTTTAGCGGTAGAACCGTAACCTAAAAGGGTGTTCGGGACCCCCAACACCTTCCCCCCTCCTCCCCTGTCCTTTTGTGTGTAAGTT] consensusID : consensus_3308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGAAACGATTGTTCTCTCTTTCTTTTCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATACTAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAAATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCGGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGACACGATGGTGCAGTATATCC] [+] EMBL BM624655 [CCGAAACGATTGTTCTCTCTTTCTTTTCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATACTAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAAATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCGGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGACACGATGGTGCAGTATATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3308#0 CCGCTTCAACATGTCGAGAGGTGTACAAACGATTGTTCTCTCTTTCTTC-CTTTTTTGTT 59 consensus_3308#1 -----------------------CCGAAACGATTGTTCTCTCTTTCTTTTCTTTTTTGTT 37 ********************** ********** consensus_3308#0 GTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACA 119 consensus_3308#1 GTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA-- 95 ********************************************************** consensus_3308#0 ATAATAATAATAATAATAATAATAATAATAATAATAATACTAATAAATAAACAATGTGTA 179 consensus_3308#1 ----------------TAATAACAATAATAATAATAATACTAATAAATAAACAATGTGTA 139 ****** ************************************* consensus_3308#0 AAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTA 239 consensus_3308#1 AAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTA 199 ************************************************************ consensus_3308#0 TGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGT 299 consensus_3308#1 TGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGT 259 ************************************************************ consensus_3308#0 ATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATG 359 consensus_3308#1 ATTTAATCGCTAACAAGTAAACGACACTAATTAAGATACTAATACAATACAATATCAATG 319 ************************************** ********************* consensus_3308#0 TACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACA 419 consensus_3308#1 TACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACA 379 ************************************************************ consensus_3308#0 GATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGAC 479 consensus_3308#1 AATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGAC 439 *********************************************************** consensus_3308#0 ACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGAT 539 consensus_3308#1 ACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGAT 499 ************************************************************ consensus_3308#0 ACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTC 599 consensus_3308#1 ACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTC 559 ************************************************************ consensus_3308#0 CTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTG 659 consensus_3308#1 CTTGCGGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTG 619 ***** ****************************************************** consensus_3308#0 ATCGCGATCGTGCCACGAAACGATGGTGCAGTATATCCCGGGAAACGGCCTGAATTGCAA 719 consensus_3308#1 ATCGCGATCGTGCCACGACACGATGGTGCAGTATATCC---------------------- 657 ****************** ******************* consensus_3308#0 GAAGAAGACAGCTAGTTGAGATAGAGTTTTAGATTTCAGACATCCCTTCACCGACTCCAC 779 consensus_3308#1 ------------------------------------------------------------ consensus_3308#0 CCGATTCTTCACTGGCATAACACAATCGTTAGTCTTAAGTTTAGCGGTAGAACCGTAACC 839 consensus_3308#1 ------------------------------------------------------------ consensus_3308#0 TAAAAGGGTGTTCGGGACCCCCAACACCTTCCCCCCTCCTCCCCTGTCCTTTTGTGTGTA 899 consensus_3308#1 ------------------------------------------------------------ consensus_3308#0 AGTT 903 consensus_3308#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||