These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [CCCCGAGGTTAAATTCAATGTCGGCAGTAGGTTTAATTAAACAAAAAATCCCCATACCCGGATAAATGCTGCTCATTATTGAATACATTTTAAGCAATAATACCATTGCGTATCATTTTTCTACAGCCGGACCGGAGGCAATTTTCCCATTAACATCATCATTCGGTAGAGATCACCGTCGCTNTGCTGCACGATTGTTAATTATCCTCGCTGCTCGTTATGGAGTTACGGAACCATTNNTAATCTGTTTACTTGCGTTTGCTTTTGCGTCTCCATGTTACCTACCCGAATGCAGGATCGTACCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTATATCACCTCCCCCGTGTGCAGGGGACCGGAAGTTGAATGGGCAAGTGTACGTATATATATGNNTTATNTATATCGCNTCGTCTCACCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGC] [+] EMBL AL694429 [CCCCGAGGTTAAATTCAATGTCGGCAGTAGGTTTAATTAAACAAAAAATCCCCATACCCGGATAAATGCTGCTCATTATTGAATACATTTTAAGCAATAATACCATTGCGTATCATTTTTCTACAGCCGGACCGGAGGCAATTTTCCCATTAACATCATCATTCGGTAGAGATCACCGTCGCTNTGCTGCACGATTGTTAATTATCCTCGCTGCTCGTTATGGAGTTACGGAACCATTNNTAATCTGTTTACTTGCGTTTGCTTTTGCGTCTCCATGTTACCTACCCGAATGCAGGATCGTACCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTATATCACCTCCCCCGTGTGCAGGGGACCGGAAGTTGAATGGGCAAGTGTACGTATATATATGNNTTATNTATATCGCNTCGTCTCACCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGC] consensusID : consensus_3342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [GTTTGCTTTTGCGTCTCCATGTTCCTCCCGAATGCGGATCGTCCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCGTGTGCGGGGCCGGAAGTTGAATGGGAAGTGTTCGTTATTTTTTTTTTCGCTCGTCTCCCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCGCTGATAAATAAATAATGCTCTCCCCCCGTTAGGTTCGTAAAATTAATCT] [+] EMBL CNS08V54 [GTTTGCTTTTGCGTCTCCATGTTCCTCCCGAATGCGGATCGTCCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCGTGTGCGGGGCCGGAAGTTGAATGGGAAGTGTTCGTTATTTTTTTTTTCGCTCGTCTCCCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCGCTGATAAATAAATAATGCTCTCCCCCCGTTAGGTTCGTAAAATTAATCT] consensusID : consensus_3342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [ACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCTTGTGCTGGGCCGGAAGTTGAATGGGAAGTGTTCGTTTTTTTTGCGCTCGTCTCCCCACCATGTTGGATTCCTTTTGTCTGTACAGCGAGACCGAATTATCAGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCAGTGATAAATAAATAATGCTCTCCCCCCCACCCGTTAGGGTCGTAAATTTTTAAAAAAAA] [-] EMBL AGA280029 [ACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCTTGTGCTGGGCCGGAAGTTGAATGGGAAGTGTTCGTTTTTTTTGCGCTCGTCTCCCCACCATGTTGGATTCCTTTTGTCTGTACAGCGAGACCGAATTATCAGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCAGTGATAAATAAATAATGCTCTCCCCCCCACCCGTTAGGGTCGTAAATTTTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3342#1 ------------------------------------------------------------ consensus_3342#2 ------------------------------------------------------------ consensus_3342#0 CCCCGAGGTTAAATTCAATGTCGGCAGTAGGTTTAATTAAACAAAAAATCCCCATACCCG 60 consensus_3342#1 ------------------------------------------------------------ consensus_3342#2 ------------------------------------------------------------ consensus_3342#0 GATAAATGCTGCTCATTATTGAATACATTTTAAGCAATAATACCATTGCGTATCATTTTT 120 consensus_3342#1 ------------------------------------------------------------ consensus_3342#2 ------------------------------------------------------------ consensus_3342#0 CTACAGCCGGACCGGAGGCAATTTTCCCATTAACATCATCATTCGGTAGAGATCACCGTC 180 consensus_3342#1 ------------------------------------------------------------ consensus_3342#2 ------------------------------------------------------------ consensus_3342#0 GCTNTGCTGCACGATTGTTAATTATCCTCGCTGCTCGTTATGGAGTTACGGAACCATTNN 240 consensus_3342#1 ----------------GTTTGCTTTTGCGTCTCCATGTTCCTCCCGAATGCGGATCGTC- 43 consensus_3342#2 ------------------------------------------------------------ consensus_3342#0 TAATCTGTTTACTTGCGTTTGCTTTTGCGTCTCCATGTTACCTACCCGAATGCAGGATCG 300 consensus_3342#1 ---CTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTTT--CACCTCCCCCGTG 98 consensus_3342#2 -----------ACATCGGAATGAGCAAGGTGCATCGGCATTTTTT--CACCTCCCCCTTG 47 consensus_3342#0 TACCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTATATCACCTCCCCCGTG 360 ******************************** * ********** ** consensus_3342#1 TGCGGGG--CCGGAAGTTGAATGGG-AAGTGTTCGT---------TATTTTTTTTTTCGC 146 consensus_3342#2 TGCTGGG--CCGGAAGTTGAATGGG-AAGTGTTCGT---------T----TTTTTTGCGC 91 consensus_3342#0 TGCAGGGGACCGGAAGTTGAATGGGCAAGTGTACGTATATATATGNNTTATNTATATCGC 420 *** *** **************** ****** *** * * * *** consensus_3342#1 T-CGTCTC-CCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCG 204 consensus_3342#2 T-CGTCTC-CCCACCATGTTGGATTCCTTTTGTCTGTACAGCGAGACCGAATTATCAGCG 149 consensus_3342#0 NTCGTCTCACCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCG 480 ****** *********** ****************** *************** *** consensus_3342#1 CTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCGCTGATAAATAAATAATGCTC 264 consensus_3342#2 CTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCAGTGATAAATAAATAATGCTC 209 consensus_3342#0 CTCGTTCGCTCGC----------------------------------------------- 493 ************* consensus_3342#1 TCCCCCC-----GTTAGGTTCGTAAAATTAATCT----- 293 consensus_3342#2 TCCCCCCCACCCGTTAGGGTCGTAAATTTTTAAAAAAAA 248 consensus_3342#0 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||