These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1108 fasta sequence [CGTGATTTGGAATTGTTTACTTTGCGTGCAATTGCAGCAACGGGCGGCCGCATTAACACCCCCCCCCCCCACCTACCCAACCATATGTTTGTTGCACCACGAGGCGAGGCGAAATTGTGTGTGTGTGTATGCGAATACAGTTAAAAAATTCACGACAAAAGCGGCTGGGTTGCGAAAATGTCCTACCACCCCCTCCTCCCCCCCTCCGATTAATTTTTTAATTTGTTGCGTTTTGTTTTTTGTTGTTGTTTTGTCTCCACTCGCAATCATCATACGAACGAAGCAGAGCATAATTGGAAGCACTGACAGAAGGAAGGAGGAAGGAGCGGGGTAGTAAAATTTAACGTACTTTTTGTTTTTGCCGTTGCTGCTGCTGTGCCTTCGTTTTTGCGTCTGTTTCGATTATTGCGACGTTAGCAACATGGGACACCACCCCGTCCCCTTCTAAATCCTCCCCACCCCTTTTAAACCCTCCTTCCAGCAGTAACATTACACACACACACACACACAGTGTGTTAAAGGCTGTGCAGGAGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGCGCGTGCTCGCTCCTTTGTGTGTGCGTGCGCCATCTTTGTTATTTGTAATTTTGTAATCTTTGTTTTGGAGACGCACTTGCTCTCTTCCCTCCCCCTCTCTCTTCCTTTCCTTTCCTTACCCTTCCCTACGGCTCAAGCAAAAACGAACACACACACACAACCATAAGATAAAAGTAACCTGGTGACTTTGTGNGCGTCTCTCTGTGTGTATGTGTGTGTGCGCGTTTGGAANAGTGTTAGAAAATAATGCAAGTTGTGTGCGTGTGTGTTTGTGTGCGTAAATGGCGTATTACTGAATGTGCATCTTTGGTTTGTGCTTGTGTGCGAGAGAATCCAATCCATGCCAAAACTCAATACGTAAAATGTGCTAATGTTTGTTGGCATTTGTTGGGAGCGATAGAAGCAACAAAAAAACAACCACAATTCACAGACACATATGTTGGCAAGGTTAAAATTTATTGGAAAAAAATGTGTGCATTTGTCATTTTGTTTTTTTTTGTTTAATATGCGAACCATCACTATAAGCAAGCGTGTGTCATAAAAG] [+] EMBL BX625166 [CGTGATTTGGAATTGTTTACTTTGCGTGCAATTGCAGCAACGGGCGGCCGCATTAACACCCCCCCCCCCCACCTACCCAACCATATGTTTGTTGCACCACGAGGCGAGGCGAAATTGTGTGTGTGTGTATGCGAATACAGTTAAAAAATTCACGACAAAAGCGGCTGGGTTGCGAAAATGTCCTACCACCCCCTCCTCCCCCCCTCCGATTAATTTTTTAATTTGTTGCGTTTTGTTTTTTGTTGTTGTTTTGTCTCCACTCGCAATCATCATACGAACGAAGCAGAGCATAATTGGAAGCACTGACAGAAGGAAGGAGGAAGGAGCGGGGTAGTAAAATTTAACGTACTTTTTGTTTTTGCCGTTGCTGCTGCTGTGCCTTCGTTTTTGCGTCTGTTTCGATTATTGCGACGTTAGCAACATGGGACACCACCCCGTCCCCTTCTAAATCCTCCCCACCCCTTTTAAACCCTCCTTCCAGCAGTAACATTACACACACACACACACACAGTGTGTTAAAGGCTGTGCAGGAGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGCGCGTGCTCGCTCCTTTGTGTGTGCGTGCGCCATCTTTGTTATTTGTAATTTTGTAATCTTTGTTTTGGAGACGCACTTGCTCTCTTCCCTCCCCCTCTCTCTTCCTTTCCTTTCCTTACCCTTCCCTACGGCTCAAGCAAAAACGAACACACACACACAACCATAAGATAAAAGTAACCTGGTGACTTTGTGNGCGTCTCTCTGTGTGTATGTGTGTGTGCGCGTTTGGAANAGT ] [-] EMBL AGA281804 [ CGTCTCTCTGTGTGTATGTGTGTGTGCGCGTTTGGAAGAGTGTTAGAAAATAATGCAAGTTGTGTGCGTGTGTGTTTGTGTGCGTAAATGGCGTATTACTGAATGTGCATCTTTGGTTTGTGCTTGTGTGCGAGAGAATCCAATCCATGCCAAAACTCAATACGTAAAATGTGCTAATGTTTGTTGGCATTTGTTGGGAGCGATAGAAGCAACAAAAAAACAACCACAATTCACAGACACATATGTTGGCAAGGTTAAAATTTATTGGAAAAAAATGTGTGCATTTGTCATTTTGTTTTTTTTTGTTTAATATGCGAACCATCACTATAAGCAAGCGTGTGTCATAAAAG] consensusID : consensus_3351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [CCCCCCCCCACCTACCCAACCATATGTTTGTTGCACCGAGGCGAAATTGTGTGTGTGCGTGCGCGCGCGCGTGCTCGCTCCTTTGTGTGTGCGTGCGCCATCTTTGTTATTTGTAATTTTGTAATCTTTGTTTTGGAGACGCACTTGCTCTCTTCCCTCCCCCTCTCTCTTCCTTTCCTTTCCTTACCCTTCCCTACGGCTCAAGCAAAAACGAACACACACACACAACCATAAGATAAAAGTAACCTGGTGACTTTGTGTGCGTCTCTCTGTGTGTATGTGTGTGTGCGCGTTTGGAAGAGTGTTAGAAAATAATGCAAGTTGTNTNCNTGTGTGTTTGTGTGCGTAAATGGCGTATTACTGAATGTGCATCTTTGGTTTGTGCCTGT] [+] EMBL AGA280106 [CCCCCCCCCACCTACCCAACCATATGTTTGTTGCACCGAGGCGAAATTGTGTGTGTGCGTGCGCGCGCGCGTGCTCGCTCCTTTGTGTGTGCGTGCGCCATCTTTGTTATTTGTAATTTTGTAATCTTTGTTTTGGAGACGCACTTGCTCTCTTCCCTCCCCCTCTCTCTTCCTTTCCTTTCCTTACCCTTCCCTACGGCTCAAGCAAAAACGAACACACACACACAACCATAAGATAAAAGTAACCTGGTGACTTTGTGTGCGTCTCTCTGTGTGTATGTGTGTGTGCGCGTTTGGAAGAGTGTTAGAAAATAATGCAAGTTGTNTNCNTGTGTGTTTGTGTGCGTAAATGGCGTATTACTGAATGTGCATCTTTGGTTTGTGCCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3351#0 CGTGATTTGGAATTGTTTACTTTGCGTGCAATTGCAGCAACGGGCGGCCGCATTAACACC 60 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 CCCCCCCCCCACCTACCCAACCATATGTTTGTTGCACCACGAGGCGAGGCGAAATTGTGT 120 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 GTGTGTGTATGCGAATACAGTTAAAAAATTCACGACAAAAGCGGCTGGGTTGCGAAAATG 180 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 TCCTACCACCCCCTCCTCCCCCCCTCCGATTAATTTTTTAATTTGTTGCGTTTTGTTTTT 240 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 TGTTGTTGTTTTGTCTCCACTCGCAATCATCATACGAACGAAGCAGAGCATAATTGGAAG 300 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 CACTGACAGAAGGAAGGAGGAAGGAGCGGGGTAGTAAAATTTAACGTACTTTTTGTTTTT 360 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 GCCGTTGCTGCTGCTGTGCCTTCGTTTTTGCGTCTGTTTCGATTATTGCGACGTTAGCAA 420 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 CATGGGACACCACCCCGTCCCCTTCTAAATCCTCCCCACCCCTTTTAAACCCTCCTTCCA 480 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 GCAGTAACATTACACACACACACACACACAGTGTGTTAAAGGCTGTGCAGGAGTGTGTGT 540 consensus_3351#1 ------------CCCCCCCCCACCTACCCAACCATATGTTTGTTGCACCGAGGCGAAATT 48 * * * * *** ** ** * * ** * * * * * consensus_3351#0 GTGTGTGTGTGTGCGTGCGCGCGCGCGTGCTCGCTCCTTTGTGTGTGCGTGCGCCATCTT 600 consensus_3351#1 GTGTGTGTG----CGTGCGCGCGCGCGTGCTCGCTCCTTTGTGTGTGCGTGCGCCATCTT 104 ********* *********************************************** consensus_3351#0 TGTTATTTGTAATTTTGTAATCTTTGTTTTGGAGACGCACTTGCTCTCTTCCCTCCCCCT 660 consensus_3351#1 TGTTATTTGTAATTTTGTAATCTTTGTTTTGGAGACGCACTTGCTCTCTTCCCTCCCCCT 164 ************************************************************ consensus_3351#0 CTCTCTTCCTTTCCTTTCCTTACCCTTCCCTACGGCTCAAGCAAAAACGAACACACACAC 720 consensus_3351#1 CTCTCTTCCTTTCCTTTCCTTACCCTTCCCTACGGCTCAAGCAAAAACGAACACACACAC 224 ************************************************************ consensus_3351#0 ACAACCATAAGATAAAAGTAACCTGGTGACTTTGTGNGCGTCTCTCTGTGTGTATGTGTG 780 consensus_3351#1 ACAACCATAAGATAAAAGTAACCTGGTGACTTTGTGTGCGTCTCTCTGTGTGTATGTGTG 284 ************************************ *********************** consensus_3351#0 TGTGCGCGTTTGGAANAGTGTTAGAAAATAATGCAAGTTGTGTGCGTGTGTGTTTGTGTG 840 consensus_3351#1 TGTGCGCGTTTGGAAGAGTGTTAGAAAATAATGCAAGTTGTNTNCNTGTGTGTTTGTGTG 344 *************** ************************* * * ************** consensus_3351#0 CGTAAATGGCGTATTACTGAATGTGCATCTTTGGTTTGTGCTTGTGTGCGAGAGAATCCA 900 consensus_3351#1 CGTAAATGGCGTATTACTGAATGTGCATCTTTGGTTTGTGCCTGT--------------- 389 ***************************************** *** consensus_3351#0 ATCCATGCCAAAACTCAATACGTAAAATGTGCTAATGTTTGTTGGCATTTGTTGGGAGCG 960 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 ATAGAAGCAACAAAAAAACAACCACAATTCACAGACACATATGTTGGCAAGGTTAAAATT 1020 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 TATTGGAAAAAAATGTGTGCATTTGTCATTTTGTTTTTTTTTGTTTAATATGCGAACCAT 1080 consensus_3351#1 ------------------------------------------------------------ consensus_3351#0 CACTATAAGCAAGCGTGTGTCATAAAAG 1108 consensus_3351#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||