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Anopheles gambiae
cluster # 3371 cluster # 3371       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3371#0 length = 861 sequences # 1  
consensus_3371#1 length = 715 sequences # 2  

consensusID : consensus_3371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 861
fasta sequence
                              [TTTTCTTTCCCCCCTTTGTTTCTCTCTTTCTTCGCAACCCCTTGCCACACACAGGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTGGTACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTGCGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGATCGGCTTCGGTGACTACGTCGCGCTGCAGAACGACCAGGCGCTGATCAACAAGCCCGGCTACGTCGCGCTCAGCCTGGTGTTCATCCTGTTCGGGCTGGCCGTCGTCGCGGCCAGCATCAATCTGCTCGTCCTGCGCTTCATGACGATGAATGCGGAAGACATCCGGCGGGAGGAGGCCGAAATGCAATCGTCCGTCGATGGGCTGACGACGTACGAGTGCGAATCGACGGGAAAGTTGCTCTCGTGCGCCAACCTGAACTACTGCTCGGAGATCGAGGAAGAGGACACCTCCGTCTGTTCGTGTACCTGCCTCGGTGGTAACAGTTTCACCACGC]

[+] EMBL BX618242             [TTTTCTTTCCCCCCTTTGTTTCTCTCTTTCTTCGCAACCCCTTGCCACACACAGGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTGGTACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTGCGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGATCGGCTTCGGTGACTACGTCGCGCTGCAGAACGACCAGGCGCTGATCAACAAGCCCGGCTACGTCGCGCTCAGCCTGGTGTTCATCCTGTTCGGGCTGGCCGTCGTCGCGGCCAGCATCAATCTGCTCGTCCTGCGCTTCATGACGATGAATGCGGAAGACATCCGGCGGGAGGAGGCCGAAATGCAATCGTCCGTCGATGGGCTGACGACGTACGAGTGCGAATCGACGGGAAAGTTGCTCTCGTGCGCCAACCTGAACTACTGCTCGGAGATCGAGGAAGAGGACACCTCCGTCTGTTCGTGTACCTGCCTCGGTGGTAACAGTTTCACCACGC]


>consensus_3371#0 TTTTCTTTCCCCCCTTTGTTTCTCTCTTTCTTCGCAACCCCTTGCCACACACAGGTGTTA AGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCG TGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCT ACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCG GCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGT TCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTGGTACGCCGCGCGAAAA AATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGAT TACTTTCGTCGGTTATTATTGCGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGA GCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGATCGGCTTCGGTGACT ACGTCGCGCTGCAGAACGACCAGGCGCTGATCAACAAGCCCGGCTACGTCGCGCTCAGCC TGGTGTTCATCCTGTTCGGGCTGGCCGTCGTCGCGGCCAGCATCAATCTGCTCGTCCTGC GCTTCATGACGATGAATGCGGAAGACATCCGGCGGGAGGAGGCCGAAATGCAATCGTCCG TCGATGGGCTGACGACGTACGAGTGCGAATCGACGGGAAAGTTGCTCTCGTGCGCCAACC TGAACTACTGCTCGGAGATCGAGGAAGAGGACACCTCCGTCTGTTCGTGTACCTGCCTCG GTGGTAACAGTTTCACCACGC



consensusID : consensus_3371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence
                              [CCGGCTACTAGGCGGAGGGAGAGGGAGATAAACAAAGAGAGCGAGAAGTTAGCTAGAACACTGGAAGGGCCAACCCTCTTCAACCCACAACCGCGTAGACGACGACGAAGACAACCATGAAGCGGCAAAACATTCGCACCCTTTCGCTGGTGGTGTGCACGTTCACCTATCTACTGATCGGGGCCGCCGTGTTCGACGCACTGGAATCGGAAACCGAAGCACGCCGTTGGGAGTTTTTGAAAAGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTACGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGAT]

[+] EMBL BM621328             [CCGGCTACTAGGCGGAGGGAGAGGGAGATAAACAAAGAGAGCGAGAAGTTAGCTAGAACACTGGAAGGGCCAACCCTCTTCAACCCACAACCGCGTAGACGACGACGAAGACAACCATGAAGCGGCAAAACATTCGCACCCTTTCGCTGGTGGTGTGCACGTTCACCTATCTACTGATCGGGGCCGCCGTGTTCGACGCACTGGAATCGGAAACCGAAGCACGCCGTTGGGAGTTTTTGAAAAGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGATCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCGGCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGGTCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCCGCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCGCAACCGGATTACTTTCGTCGGTTATTATTACGACCGGAGCGGCTGTGTTTTCACGCTACGAAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGAT]
[+] EMBL BX608391             [                                                                                                                                                                                                                                                                                                                                                                                                                     GCCACTCGACGCCGGTCACCACCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGCTCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCCGCGCGAAAAAATATCTGCGCCGCCAGCAGACGGAAGCTACCGAGATGAACCTGAAGCTCGCAACCGGATTACTTTCGTCGGGTATTATTACGACC                                                                                ]


>consensus_3371#1 CCGGCTACTAGGCGGAGGGAGAGGGAGATAAACAAAGAGAGCGAGAAGTTAGCTAGAACA CTGGAAGGGCCAACCCTCTTCAACCCACAACCGCGTAGACGACGACGAAGACAACCATGA AGCGGCAAAACATTCGCACCCTTTCGCTGGTGGTGTGCACGTTCACCTATCTACTGATCG GGGCCGCCGTGTTCGACGCACTGGAATCGGAAACCGAAGCACGCCGTTGGGAGTTTTTGA AAAGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGA TCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCG GCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGG TCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGC TCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCC GCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCG CAACCGGATTACTTTCGTCGGTTATTATTACGACCGGAGCGGCTGTGTTTTCACGCTACG AAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3371#0      ------------------------------------------------------------
consensus_3371#1      CCGGCTACTAGGCGGAGGGAGAGGGAGATAAACAAAGAGAGCGAGAAGTTAGCTAGAACA 60
                                                                                  

consensus_3371#0      ------------------------------------------------------------
consensus_3371#1      CTGGAAGGGCCAACCCTCTTCAACCCACAACCGCGTAGACGACGACGAAGACAACCATGA 120
                                                                                  

consensus_3371#0      ------------------------------------------------------------
consensus_3371#1      AGCGGCAAAACATTCGCACCCTTTCGCTGGTGGTGTGCACGTTCACCTATCTACTGATCG 180
                                                                                  

consensus_3371#0      -----TTTTCTTTCCCCCCTTTGTTTCTCTCTTTCTTCGCAACCCCTTGCCACAC----A 51
consensus_3371#1      GGGCCGCCGTGTTCGACGCACTGGAATCGGAAACCGAAGCACGCCGTTGGGAGTTTTTGA 240
                                 ***  * *  **           *   ***  ** ***  *       *

consensus_3371#0      CAGGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGA 111
consensus_3371#1      AAAGTGTTAAGGCGTCCTTTGTCGCGAAGTACAACATCACGCCGGAGGACTACCACATGA 300
                       * *********************************************************

consensus_3371#0      TCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCG 171
consensus_3371#1      TCGAGATCGTGATCACGGAGAACAAACCGCACAAAGCGGGACCCCAGTGGAAGTTTGCCG 360
                      ************************************************************

consensus_3371#0      GCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGG 231
consensus_3371#1      GCGCGTTCTACTTTGCCACGGTCGTGCTGGCGATGATCGGGTACGGCCACTCGACGCCGG 420
                      ************************************************************

consensus_3371#0      TCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGC 291
consensus_3371#1      TCACCATCGGCGGGAAGGCGTTCTGCATGGCGTACGCGATGGTCGGCATTCCGCTGGGGC 480
                      ************************************************************

consensus_3371#0      TCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTGGTACGCC 351
consensus_3371#1      TCGTCATGTTCCAAAGCATTGGCGAACGTTTGAACAAGTTTGCCTCGGTTGTAATACGCC 540
                      ****************************************************  ******

consensus_3371#0      GCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCG 411
consensus_3371#1      GCGCGAAAAAATATCTGCGCTGCCAGCAGACGGAAGCTACCGAGATGAACCTGATGCTCG 600
                      ************************************************************

consensus_3371#0      CAACCGGATTACTTTCGTCGGTTATTATTGCGACCGGAGCGGCTGTGTTTTCACGCTACG 471
consensus_3371#1      CAACCGGATTACTTTCGTCGGTTATTATTACGACCGGAGCGGCTGTGTTTTCACGCTACG 660
                      ***************************** ******************************

consensus_3371#0      AAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGATCGGCT 531
consensus_3371#1      AAGGATGGAGCTATTTCGACAGCTTCTACTACTGCTTTGTAACACTGACGACGAT----- 715
                      *******************************************************     

consensus_3371#0      TCGGTGACTACGTCGCGCTGCAGAACGACCAGGCGCTGATCAACAAGCCCGGCTACGTCG 591
consensus_3371#1      ------------------------------------------------------------
                                                                                  

consensus_3371#0      CGCTCAGCCTGGTGTTCATCCTGTTCGGGCTGGCCGTCGTCGCGGCCAGCATCAATCTGC 651
consensus_3371#1      ------------------------------------------------------------
                                                                                  

consensus_3371#0      TCGTCCTGCGCTTCATGACGATGAATGCGGAAGACATCCGGCGGGAGGAGGCCGAAATGC 711
consensus_3371#1      ------------------------------------------------------------
                                                                                  

consensus_3371#0      AATCGTCCGTCGATGGGCTGACGACGTACGAGTGCGAATCGACGGGAAAGTTGCTCTCGT 771
consensus_3371#1      ------------------------------------------------------------
                                                                                  

consensus_3371#0      GCGCCAACCTGAACTACTGCTCGGAGATCGAGGAAGAGGACACCTCCGTCTGTTCGTGTA 831
consensus_3371#1      ------------------------------------------------------------
                                                                                  

consensus_3371#0      CCTGCCTCGGTGGTAACAGTTTCACCACGC 861
consensus_3371#1      ------------------------------
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)