These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 973 fasta sequence [CCGNCCGGACCGGNATGTAAATACGTGCACTCGGTTAAACGNCCGATTGCCTAGATGGGCAGCAATAGCTACTGTCACCTTGCGGCTGAACTCTGTGCNTCGCGTTAGACGCGCGATGCGGTTCGATTACGATTGATCAACTGGTGAATTTCCGTTCCAGTACCAAGATCGATGATCGCACCACTTCTCAGCGGCATCATCTGTGTGTGCCGCGGCTGCACTGCTGCCGTTGCGCGGGAGAAGCATTCACGATCACTGATCGTAGTAAACATGACCGATAACTTCTCTGGTCCCCTCGGTGGTCGCCTATCTCAGCAGTGTTTACGCGCGGCAGAGAGAATGCACGCGTTTGGGGGGGTGGCATGCGAGAGAGGCAACAAGTCGAACGATCGGTTGTTGATTTTTCCCGGGTGCACATACGTAGCGGAGGCAGCTTCGAAGCGTCCAGCGCTGCCCAGTTACGAACGCGCCAGTCTTGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACC------CGACGATACTCAACAGCCGCGTGGTGTGGTGGGTTTTAGTAAAAGTTTTCGGTTGCTGCGCAATGTTGATCTTGTTCGCGAGTGGTGTGTTGCGGGTTGGTTTTGCGTGTCTACTGTGACAGCAACAGCATTCGTTCGTTTCTGTTTGCGCTGGACGAAGTGAATGGTTCGTCTCTCCCGGTAATCTGGAGAGCCCGAAGAGAAGTGCCACTGTGAACAAATATCAAACAAACACAATTCGGTTGGAGTAGGGAATTGTTCAAGATACAAGTAGGGCCCCGTTTCAGGATGTTTTCGCGCAAACAGTGAAAAACAGGGTACGAACAGTGCTTTTGTTTGACTCGTGACAAAAAATTGGAAATTGAGATATTTCTCGAGGGGTTTTAGCCTGGGTAAT] [-] EMBL BX626570 [CCGNCCGGACCGGNATGTAAATACGTGCACTCGGTTAAACGNCCGATTGCCTAGATGGGCAGCAATAGCTACTGTCACCTTGCGGCTGAACTCTGTGCNTCGCGTTAGACGCGCGATGCGGTTCGATTACGATTGATCAACTGGTGAATTTCCGTTCCAGTACCAAGATCGATGATCGCACCACTTCTCAGCGGCATCATCTGTGTGTGCCGCGGCTGCACTGCTGCCGTTGCGCGGGAGAAGCATTCACGATCACTGATCGTAGTAAACATGACCGATAACTTCTCTGGTCCCCTCGGTGGTCGCCTATCTCAGCAGTGTTTACGCGCGGCAGAGAGAATGCACGCGTTTGGGGGGGTGGCATGCGAGAGAGGCAACAAGTCGAACGATCGGTTGTTGATTTTTCCCGGGTGCACATACGTAGCGGAGGCAGCTTCGAAGCGTCCAGCGCTGCCCAGTTACGAACGCGCCAGTCTTGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACC CGACGATACTCAACAGCCGCGTGGTGTGGTGGGTTTTAGTAAAAGTTTTCGGTTGCTGCGCAATGTTGATCTTGTTCGCGAG ] [+] EMBL BM625378 [ ccgcccACGCGTCCG CTTGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCAACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACCCGGTTACGACGATACTCAACAGCCGCGTGGTGTGGTGGGTTTTAGTAAAAGTTTTAGGGTGCTGCGCAATGTTGATCTTGTTCGCGAGTGGTGTGTTGCGGGTTGGTTTTGCGTGTCTACTGTGACAGCAACAGCATTCGTTCGTTTCTGTTTGCGCTGGACGAAGTGAATGGTTCGTCTCTCCCGGTAATCTGGAGAGCCCGAAGAGAAGTGCCACTGTGAACAAATATCAAACAAACACAATTCGGTTGGAGTAGGGAATTGTTCAAGATACAAGTAGGGCCCCGTTTCAGGATGTTTTCGCGCAAACAGTGAAAAACAGGGTACGAACAGTGCTTTTGTTTGACTCGTGACAAAAAATTGGAAATTGAGATATTTCTCGAGGGGTTTTAGCCTGGGTAAT] consensusID : consensus_3383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGGTCTATTATACCCGGTTCCGACGATACTCAACAGCCGCGTGGTGTGTTCGAGAACTGCGCATGTTTATCCAGTTTTTTTTCGTTGTGTTATTCTGTGCCCATGCTATTAACACCTTTGCTGTTCCTTGCAGTGTGTGATAGTGTCGCGATGAGCTTTTTGGATTAGGTTGAAACCTGTGTGAAATGAAGGTATTTGCCGTGCGCCCGTATGTGCCTAGGACAGCAGCCGTAGGGCAGTTGTGAAAATCGTGACAAACGCAAAACATTACCTTCTGCTATATCGTGCCCTCCCCCCCATCGTTCATAAAGTGTACAGTGCATTATGCTAATCAATGCGATACTGAGGGCATTTATCGTGCACACGCTGAAACGCCGACGACGACGCACCAAATGTACGCTGCTGCGAGCGTTCCTCAGAATGGTGAACTTCCGCCGATTCGGCCACTATCAGCGCTACCTGGCGTATCCGGTGCGCGAGGTCGATGGACCAGCGCCGAGGGTCGTTCCACCGGTGGAGGCGGCGGCGGCGCCACCAGCGGCCGTAGCCGCCATACCTGCAAATGTCCCACCGGAGCAGGGCGCTAACAGGCGT] [+] EMBL BM620739 [CCGGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGGTCTATTATACCCGGTTCCGACGATACTCAACAGCCGCGTGGTGTGTTCGAGAACTGCGCATGTTTATCCAGTTTTTTTTCGTTGTGTTATTCTGTGCCCATGCTATTAACACCTTTGCTGTTCCTTGCAGTGTGTGATAGTGTCGCGATGAGCTTTTTGGATTAGGTTGAAACCTGTGTGAAATGAAGGTATTTGCCGTGCGCCCGTATGTGCCTAGGACAGCAGCCGTAGGGCAGTTGTGAAAATCGTGACAAACGCAAAACATTACCTTCTGCTATATCGTGCCCTCCCCCCCATCGTTCATAAAGTGTACAGTGCATTATGCTAATCAATGCGATACTGAGGGCATTTATCGTGCACACGCTGAAACGCCGACGACGACGCACCAAATGTACGCTGCTGCGAGCGTTCCTCAGAATGGTGAACTTCCGCCGATTCGGCCACTATCAGCGCTACCTGGCGTATCCGGTGCGCGAGGTCGATGGACCAGCGCCGAGGGTCGTTCCACCGGTGGAGGCGGCGGCGGCGCCACCAGCGGCCGTAGCCGCCATACCTGCAAATGTCCCACCGGAGCAGGGCGCTAACAGGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3383#0 CCGNCCGGACCGGNATGTAAATACGTGCACTCGGTTAAACGNCCGATTGCCTAGATGGGC 60 consensus_3383#1 ------------------------------------------------------------ consensus_3383#0 AGCAATAGCTACTGTCACCTTGCGGCTGAACTCTGTGCNTCGCGTTAGACGCGCGATGCG 120 consensus_3383#1 ------------------------------------------------------------ consensus_3383#0 GTTCGATTACGATTGATCAACTGGTGAATTTCCGTTCCAGTACCAAGATC-GATGATCGC 179 consensus_3383#1 ------------------------------CCGGCCGCACGGGCGAGAGCTGATCATCGC 30 * * ** * *** * *** ***** consensus_3383#0 ACCACTTCTCAGCGGCATCATCTGTGTGTGCCGCGGCTGCACT--GCTGCCGTTGCGCGG 237 consensus_3383#1 GTTCCTTCCTCGCGGGACAAGCCGACTGACCTTCTGTTTCCGTTCACTTCGGTCTATTAT 90 **** **** * * * * ** * * * * * * ** * ** consensus_3383#0 GAGAAGCATTCACGATCACTGATCGTAGTA-AACATGACCGATAACTTCTCTGGTCCCCT 296 consensus_3383#1 ACCCGGTTCCGACGATACTCAACAGCCGCGTGGTGTGTTCGAGAACTGCGCATGTTTATC 150 * ***** * * * ** *** **** * * ** consensus_3383#0 CGGTGGTCGCCTATCTCAGCAGTGTTTACGCGCGGCAGAGAGAATGCACGCGTTTGGGGG 356 consensus_3383#1 CAGT------TTTTTTTCGTTGTGTTATTCTGTGCCCATGCTATTA-ACACCTTTGC--- 200 * ** * * * * ***** * * * * * * ** * **** consensus_3383#0 GGTGGCATGCGAGAGAGGCAACAAGTCGAACGATCGGTTGTTGATTTTTCCCGGGTGCAC 416 consensus_3383#1 TGTTCCTTGC-AGTGTGTGATAGTGTCG--CGATGAGCTTTTTGGATTAGGTTGAAACCT 257 ** * *** ** * * * **** **** * * ** ** * * consensus_3383#0 ATACGTAGCGGAGGCAGCTTCGAAGCGTCCAGCGCTGCCCAGTTACGAACGCGCCAGTCT 476 consensus_3383#1 GTGTGAAATGAAGGTATTTGCCGTGCGCCCGTATGTGCCTAGG-------ACAGCAGCCG 310 * * * * *** * * * *** ** **** ** * *** * consensus_3383#0 TGCGTTAGCTGCCGCACGGGCGAGAGCTGATCATCGCGTTCCTTCCTCGCGGGACAAGCC 536 consensus_3383#1 TAGGGCAGTTGTGAAAATCGTGACAAACG--CAAAACATTACCTTCTGCTATATCGTGCC 368 * * ** ** * * ** * * ** * ** * * ** * *** consensus_3383#0 GACTGACCTTCTGTTTCCGTTCACTTCGATCTATTATACCCGACGATACTCAACAGCCGC 596 consensus_3383#1 CTCCCCCCCATCGTTCATAAAGTGTACAGTGCATTATGCTAATCAATGCGATACTGAGGG 428 * ** *** * * * ***** * * ** * ** * * consensus_3383#0 GTGGTGTGGTGGGTTTTAGTAAAAGTTTTCGGTTGCTGCGCAATGTTGATCTTGTTCGCG 656 consensus_3383#1 CATTTATCGTGCACACGCTGAAACGCCGACGAC-GACGCACCAAATGTACGCTGCT-GCG 486 * * *** *** * ** * ** * * * * ** * *** consensus_3383#0 AGTGGTGTGTTGCGGGTTGGTTTTGCGTGTCTACTGTGACAGCAACAGCATTCGTTCGTT 716 consensus_3383#1 AGCGTTCCTCAGAATGGTGAACTTCCGC--CGATTCGGCCACTATCAGCGCTACCTGGC- 543 ** * * * * ** ** ** * * * * ** * **** * * * consensus_3383#0 TCTGTTTGCGCTGGACGAAGTGAATGGTTCGTCTCTCCCGGTAATCT-----GGAGAGCC 771 consensus_3383#1 ---GTATCCGGTGCGCGAGGTCGATGGACCAGCGCCGAGGGTCGTTCCACCGGTGGAGGC 600 ** * ** ** *** ** **** * * * *** * * *** * consensus_3383#0 CGAAGAGAAGT-GCCACTGTGAACAAATATCAAACAAACACA-ATTCGGTTGGAGTAGGG 829 consensus_3383#1 GGCGGCGGCGCCACCAGCGGCCGTAGCCGCCATACCTGCAAATGTCCCACCGGAGCAGGG 660 * * * * *** * * ** ** ** * * * **** **** consensus_3383#0 AATTGTTCAAGATACAAGTAGGGCCCCGTTTCAGGATGTTTTCGCGCAAACAGTGAAAAA 889 consensus_3383#1 CGCTAACAGGCGT----------------------------------------------- 673 * * consensus_3383#0 CAGGGTACGAACAGTGCTTTTGTTTGACTCGTGACAAAAAATTGGAAATTGAGATATTTC 949 consensus_3383#1 ------------------------------------------------------------ consensus_3383#0 TCGAGGGGTTTTAGCCTGGGTAAT 973 consensus_3383#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||