These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGCGGACGCGTGGGTCGCCAAATGATCACGTGGGTGTTCGGCAAGGAGGATTCAAAGTTTAAAAATTGCGAAAATCTTCAGGTGCTGTAAGCCCAGCCGAGGTGTAATGTTAACGGGGGGAGGTGACATACACCAAAGTAACAATAACATTTTACGTGCGGATCAGGTTGATTCTTATCTTGTTTGCGTATTCAAGCGCCGTTCATTAGAAAAGCAAGTAAGTGAAATTTAAAATGCGATGCAAACAATGACTTTAGGGTTGATTCGATGGAATCAGCGGAAAAAGCCTACAGCATAAAAGAAATATATTAAAGCATAACTGGAAAACAGAAAACGATAAGACAGAGAGCAGAGTAAAAAAGCAACCAAATGCAAACAACTAAACAGCAACAACAACAACATCAAACCGCAACATTGATATCGTTTACACATCTATATGCTAAAAGTGCCTTTGTCAGCGTATCTGAAACTGCTTAGATATGTATAATGAAATGCGATCAGTAGAAAGCAATGGTATAGGACGGTTTCCCATGTCTACGGGACGATTCGTGGAGAACATATTGAATGCAAAAGAGGCGTACAGGGTGCTAAGGGCACAATTATGTGTGAAGGTTATGTGTGTGTTCGGTTCAATCGATAGCAACCGGACACTCGACTCAAAACCAATGGAAA] [+] EMBL BM625507 [CCGCGGACGCGTGGGTCGCCAAATGATCACGTGGGTGTTCGGCAAGGAGGATTCAAAGTTTAAAAATTGCGAAAATCTTCAGGTGCTGTAAGCCCAGCCGAGGTGTAATGTTAACGGGGGGAGGTGACATACACCAAAGTAACAATAACATTTTACGTGCGGATCAGGTTGATTCTTATCTTGTTTGCGTATTCAAGCGCCGTTCATTAGAAAAGCAAGTAAGTGAAATTTAAAATGCGATGCAAACAATGACTTTAGGGTTGATTCGATGGAATCAGCGGAAAAAGCCTACAGCATAAAAGAAATATATTAAAGCATAACTGGAAAACAGAAAACGATAAGACAGAGAGCAGAGTAAAAAAGCAACCAAATGCAAACAACTAAACAGCAACAACAACAACATCAAACCGCAACATTGATATCGTTTACACATCTATATGCTAAAAGTGCCTTTGTCAGCGTATCTGAAACTGCTTAGATATGTATAATGAAATGCGATCAGTAGAAAGCAATGGTATAGGACGGTTTCCCATGTCTACGGGACGATTCGTGGAGAACATATTGAATGCAAAAGAGGCGTACAGGGTGCTAAGGGCACAATTATGTGTGAAGGTTATGTGTGTGTTCGGTTCAATCGATAGCAACCGGACACTCGACTCAAAACCAATGGAAA] consensusID : consensus_340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [GCAGAATCCGCACGATGTAGATAAGGCGACATTCAGCCGGGCCGACCAGCTGCTCAACATGCTGCACGATATGGACGTGAGCCGGTCGCGGCCAACAATACTGGTGGCGAACAAGATCGATTTGGCCCGATCACGAGCGGTTTCTTCGCAGGGTAAACGGGAAATGTCTTGCCTGTACGCACAAAATCAAATTCATCGAGGTATCGGTAGCAATCAACCATAATGTGGACGAATTGCTTGCCGGCATCCTGTCGCAGATACGCCTCAAGCGAGAGCAGTCCGCCGTACAGGGCATTCGAGAACCATCGTCTGCACACTGGTACAAAAATCGCAGCGTTGTGCGGGCATCGATGAAGGCTCGCCAAATGATCACGTGGGTGTTCGGCACAGGAGGATTCAAGAGTTTAAGAAATTGCGAAAATCTTCAGGGTGCTGTAAGCCCAGCCGGGGTGTAAGTGTTAACGGAGGGAGGGGACATACACCGAAAGTANACAGTAACATTTNTACCGTGTGGAATCAGGGTATGAGTCTCAGTCATAGGTGTAGCG] [+] EMBL BX466127 [GCAGAATCCGCACGATGTAGATAAGGCGACATTCAGCCGGGCCGACCAGCTGCTCAACATGCTGCACGATATGGACGTGAGCCGGTCGCGGCCAACAATACTGGTGGCGAACAAGATCGATTTGGCCCGATCACGAGCGGTTTCTTCGCAGGGTAAACGGGAAATGTCTTGCCTGTACGCACAAAATCAAATTCATCGAGGTATCGGTAGCAATCAACCATAATGTGGACGAATTGCTTGCCGGCATCCTGTCGCAGATACGCCTCAAGCGAGAGCAGTCCGCCGTACAGGGCATTCGAGAACCATCGTCTGCACACTGGTACAAAAATCGCAGCGTTGTGCGGGCATCGATGAAGGCTCGCCAAATGATCACGTGGGTGTTCGGCACAGGAGGATTCAAGAGTTTAAGAAATTGCGAAAATCTTCAGGGTGCTGTAAGCCCAGCCGGGGTGTAAGTGTTAACGGAGGGAGGGGACATACACCGAAAGTANACAGTAACATTTNTACCGTGTGGAATCAGGGTATGAGTCTCAGTCATAGGTGTAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_340#0 CCGCGGACGCGTGGGTCGCCAAATGATCACGTGGGTGTTCGGCAAGGAGGATTCAAAGTT 60 consensus_340#1 -------------------------------------------GCAGAATCCGCACGATG 17 ** ** * consensus_340#0 TAAAAATTGCGAAAATCTTCAGGTGCTGTAAGCCCAGCCGAGGTGTAATGTTAACGGGGG 120 consensus_340#1 TAGATAAGGCGACATTCAGCCGG-GCCGACCAGCTGCTCAACATGCTGCACGAT---ATG 73 ** * * **** * ** * ** ** * * * * ** * * consensus_340#0 GAGGTGACATACACCAAAGTAACAATAACATTTTACGTGCGGATCAGGTTGATTCTTATC 180 consensus_340#1 GACGTGAGCCGGTCGCGGCCAACAATACTGGT-----GGCGAACAAGATCGATT------ 122 ** **** * ******* * *** * ** * **** consensus_340#0 TTGTTTGCGTATTCAAGCGCCGTTCATTAGAAAAGCAAGTAAGTGAAATTTAAAATGCGA 240 consensus_340#1 ----TGGCCCGATCACGAGCGGTTTCTTCGCAGGGTAAACGGGAAATGTCTTGCCTGT-A 177 * ** *** * ** *** ** * * * ** * * * * ** * consensus_340#0 TGCAAACAATGACTTTAGGGTTGATTCGATGGAATCAGCGGAAAAAGCCTACAGCATAAA 300 consensus_340#1 CGCACAAAATCAAATTCA-------TCGA-GGTATCGGTAGCAATCAACCATAATGTGGA 229 *** * *** * ** **** ** *** * * ** * * * * * consensus_340#0 AGAAATATATTAAAGCATAAC-TGGAAAACAGAAAACGATAAGACAGAGAGCAGAGTAAA 359 consensus_340#1 CGAATTGCTTGCCGGCATCCTGTCGCAGATACGCCTCAAGCGAGAGCAGTCCGCCGTACA 289 *** * * **** * * * * * * * ** * *** * consensus_340#0 AAAGCAACCAAATGCAAACAACTAAACAGCAACAACAACAACATCAAACCGCAACATTGA 419 consensus_340#1 GG-GCATTCGAGAACCATCGTCTGCACACTGGTA-CAAAA--ATCGCAGCGTTGTGCGGG 345 *** * * * * * ** *** * *** * *** * ** * consensus_340#0 TATCGTTTACACATCTATATGCTAAAAGTGCCTTTGTCAGCGTATCTGAAACTGCTTAGA 479 consensus_340#1 CATCGATGAAGGCTC-----GCCAAATGATCACGTGGGTGTTCGGCACAGGAGGATTCAA 400 **** * * ** ** *** * * ** * * * * ** * consensus_340#0 TATGTATAATGAAATGCGA---TCAGTAGAAAGCAATGGTATAGGACGGTTTCCCA-TGT 535 consensus_340#1 GA-GTTTAAGAAATTGCGAAAATCTTCAGGGTGCTGTAAGCCCAGCCGGGGTGTAAGTGT 459 * ** *** ** ***** ** ** ** * * *** * * *** consensus_340#0 CTACGGGACGATTCGTGGAGAACATATTGAATGCAAA-AGAGGCGTACAGGGTGCTAAGG 594 consensus_340#1 TAACGGAGGGAG----GGGACATACACCGAAAGTANACAGTAACATTTNTACCGTGTGGA 515 **** ** ** * * * *** * * * ** * * * * consensus_340#0 GCACAATTATGTGTGAAGGTTATGTGTGTGTTCGGTTCAATCGATAGCAACCGGACACTC 654 consensus_340#1 ATCAGGGTATGAGTCTCAGTCATAGGTGTAGCG--------------------------- 548 **** ** ** ** **** consensus_340#0 GACTCAAAACCAATGGAAA 673 consensus_340#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||