These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence [CCGGTTGTGTACGTGTTGGCGAGAGTGAAACGGTGTGAAAAGCCCCACAAGAGCCAGGTAAGGCAGGAGGGAGAGGCGGTGGGAACTAATGCTTGGGAGTTGGAGTTCGAGTTCAGTTTCGCCAAACCGCCGAACGTCAACACAATAACGGGAAAGTTTTTTTTCTCCACTCCGCTGGCGAAAGTGGCGTGCGTGCGTGTGTGTGTGTGCGTGTTTGGTTGTTGTTTGCCCTCGTGCCCGATTTGCCCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCTTCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTGTGTGTGTGTGTTGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAGGTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAACCGTTCGCGACCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTCTCTGTGTGTGTGTGTGGGGGGTTTTTTGGGGGGGGGTCAATTGCTC] [+] EMBL BM625322 [CCGGTTGTGTACGTGTTGGCGAGAGTGAAACGGTGTGAAAAGCCCCACAAGAGCCAGGTAAGGCAGGAGGGAGAGGCGGTGGGAACTAATGCTTGGGAGTTGGAGTTCGAGTTCAGTTTCGCCAAACCGCCGAACGTCAACACAATAACGGGAAAGTTTTTTTTCTCCACTCCGCTGGCGAAAGTGGCGTGCGTGCGTGTGTGTGTGTGCGTGTTTGGTTGTTGTTTGCCCTCGTGCCCGATTTGCCCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCTTCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTGTGTGTGTGTGTTGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAGGTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAACCGTTCGCGACCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTCTCTGTGTGTGTGTGTGGGGGGTTTTTTGGGGGGGGGTCAATTGCTC] [+] EMBL AGA282556 [ CCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCTTCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTGTGTGTGTGTG TGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAGGTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAATCGTTCGCGACCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTC GTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTCTGTGTGTGTGTGTGTttttgt ] consensusID : consensus_3424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [CCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTATGTGTGTGTGTGTGTTTTTGTGTGTATGTCAATTGCACCACCGAGCGAGTGAAGCCACCGATCAACCTGCCCTGGTCCCGGTCCGCTGACAGCGACCGGAAATCGATTATGCCCACCCGGGGGGAACACCACACCACGATCAACTGTGTGACGGGCGTGTAGCGTTGTACTAGGCGGGGAGCACCATGGCACCGAACCTGAGCAAGCTGCTCGGCAACCAGAATGCCGTGGTCGGTGTGGCC] [-] EMBL AGA280927 [CCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAACGCGGGGCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGTCTGCGCAAGTGTGTGTATGTGTGTGTGTGTGTTTTTGTGTGTATGTCAATTGCACCACCGAGCGAGTGAAGCCACCGATCAACCTGCCCTGGTCCCGGTCCGCTGACAGCGACCGGAAATCGATTATGCCCACCCGGGGGGAACACCACACCACGATCAACTGTGTGACGGGCGTGTAGCGTTGTACTAGGCGGGGAGCACCATGGCACCGAACCTGAGCAAGCTGCTCGGCAACCAGAATGCCGTGGTCGGTGTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3424#0 CCGGTTGTGTACGTGTTGGCGAGAGTGAAACGGTGTGAAAAGCCCCACAAGAGCCAGGTA 60 consensus_3424#1 ------------------------------------------------------------ consensus_3424#0 AGGCAGGAGGGAGAGGCGGTGGGAACTAATGCTTGGGAGTTGGAGTTCGAGTTCAGTTTC 120 consensus_3424#1 ------------------------------------------------------------ consensus_3424#0 GCCAAACCGCCGAACGTCAACACAATAACGGGAAAGTTTTTTTTCTCCACTCCGCTGGCG 180 consensus_3424#1 ------------------------------------------------------------ consensus_3424#0 AAAGTGGCGTGCGTGCGTGTGTGTGTGTGCGTGTTTGGTTGTTGTTTGCCCTCGTGCCCG 240 consensus_3424#1 -----------------------------------------------CCATTCGCAGCTC 13 * *** * consensus_3424#0 ATT-TGCCCATTGCCACTAGGTGGGCTGGTGTAGCAGGTCTCGGGCCCTTAACCTCTTCT 299 consensus_3424#1 ATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAACGCGGGGCCAGCTCT---CCTTCTCT 70 ** * * * ** * * * * *** * * * ** ** *** *** consensus_3424#0 TCGGGTAACAATCAGGTGTTGGTGGACTAGAGCGTCGCGCGCTGCGTGCTTGTTTGTGTG 359 consensus_3424#1 C----TGACAGCTGGGTGT-GACACACGATAAGGGGTCACGATAC-TGTCTGCGCAAGTG 124 * *** ***** * ** * * * * ** * * ** ** *** consensus_3424#0 TGTGTGTGTGTTGTGGGGGTGTCTGTGTGTGGACAACATCCCATCAGTCGCGGGACACAG 419 consensus_3424#1 TGTGTATGTGT-GTGTGTGTGTTTTTGTGTGTATGTCAATTGCACCACCGAGCGAGTGAA 183 ***** ***** *** * **** * ****** * ** * ** * ** * consensus_3424#0 GTAATCAGCGGGCGCCTGCTAGACACAGCAGGGCTGGACTTGGTTACGAACCGTTCGCGA 479 consensus_3424#1 GCCACCGATCAACCTGCCCTGGTCCCGGTCCG-CTGACAGCGACCGGAAATCGATTATG- 241 * * * * ** * * * * * *** * ** ** * * consensus_3424#0 CCCATTCGCAGCTCATCATCCTCCCTGTCGCCGTCGTCGTCGTCGTAGTCGTAACGCGGG 539 consensus_3424#1 CCCACCCGGGGGGAACA--CCACACCACGATCAACTGTGT-GACGGGCGTGTAGCGTTGT 298 **** ** * * ** * * * * ** * ** *** ** * consensus_3424#0 GCCAGCTCTCCTTCTCTCTGACAGCTGGGTGTGACACACGATAAGGGGTCACGATACTGT 599 consensus_3424#1 ACTAGGCGGGGAGCACCATGGCA-CCGAACCTGA-GCAAGCTGCTCGGCAACCAGAATGC 356 * ** * * ** ** * * *** ** * * ** ** * * ** consensus_3424#0 CTGCGCAAGTGTGTGTCTCTGTGTGTGTGTGTGGGGGGTTTTTTGGGGGGGGGTCAATTG 659 consensus_3424#1 CGTGGTCGGTGTG-GCC------------------------------------------- 372 * * ***** * * consensus_3424#0 CTC 662 consensus_3424#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||