These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCGAAACAGAACCGACACACAGAAAGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACACATACATTAGGGC] [+] EMBL BM584751 [CCGCGAAACAGAACCGACACACAGAAAGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACACATACATTAGGGC] consensusID : consensus_3450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCGGACGCGTGGGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACAC] [+] EMBL BM615406 [CCGCGGACGCGTGGGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACAC] consensusID : consensus_3450#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [TATCCATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTATACCTGTTGAATCGGAGGACGCGCAAAAGCTTCGGTTTCAGGTGGAGCTGGAGTTTGTGCAGTGTTTAGCAAATCCCAACTATCTGCACTTTTTAGCCCAGCGAGGATACTTCAAAGATGCTGCCTTCGTCAACTACCTTAAGTATCTGCTGTACTGGAAGGAGCCGGAGTACGCGAAATACCTCAAGTTTCCCATGTGTCTGTACTTTCTCGATCTGCTGCAGTACGAGCACTTTCGGCGCGAGATCGTCAGCGCACAGTGCTGCAAGTTTATCGACGACCAGGCGATCCTGCTGTGGCAGCACTACACCCGGCGGCGCACGCGGCTAACCGCGCTCGGGACCACCAGCCTGACGGGGCTGGCGGTGGGCGGCCAGCCGGTCGGGGGCGGTGTCCAAGGGACGCTACTATCGAACGATCCCGCCA] [+] EMBL BX628886 [TATCCATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTATACCTGTTGAATCGGAGGACGCGCAAAAGCTTCGGTTTCAGGTGGAGCTGGAGTTTGTGCAGTGTTTAGCAAATCCCAACTATCTGCACTTTTTAGCCCAGCGAGGATACTTCAAAGATGCTGCCTTCGTCAACTACCTTAAGTATCTGCTGTACTGGAAGGAGCCGGAGTACGCGAAATACCTCAAGTTTCCCATGTGTCTGTACTTTCTCGATCTGCTGCAGTACGAGCACTTTCGGCGCGAGATCGTCAGCGCACAGTGCTGCAAGTTTATCGACGACCAGGCGATCCTGCTGTGGCAGCACTACACCCGGCGGCGCACGCGGCTAACCGCGCTCGGGACCACCAGCCTGACGGGGCTGGCGGTGGGCGGCCAGCCGGTCGGGGGCGGTGTCCAAGGGACGCTACTATCGAACGATCCCGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3450#0 CCGCGAAACAGAACCGACACACAGAAAGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATA 60 consensus_3450#1 ----------CCGCGGACGCGTGG---GCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATA 47 consensus_3450#2 ----------------------------------------------------------TA 2 ** consensus_3450#0 TCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTT 120 consensus_3450#1 TCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTT 107 consensus_3450#2 TCCATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTT 62 ** ********************************************************* consensus_3450#0 GAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTG 180 consensus_3450#1 GAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTG 167 consensus_3450#2 GAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTG 122 ************************************************************ consensus_3450#0 CTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGA 240 consensus_3450#1 CTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGA 227 consensus_3450#2 CTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTATACCTGT--TGAATCGGAGGA 180 *************************************** ** * * ** ** consensus_3450#0 AGCGGATAGCAAGCGAAT---AGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCT 297 consensus_3450#1 AGCGGATAGCAAGCGAAT---AGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCT 284 consensus_3450#2 CGCGCAAAAGCTTCGGTTTCAGGTGGAGCTGGAGTTTGTGCAGTGTTTAGCA--AATCCC 238 *** * * ** * * * * * *** * * * **** * ** ** consensus_3450#0 CGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCC 357 consensus_3450#1 CGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCC 344 consensus_3450#2 AACTATCTGCACTTTTTAGCCCAGCGAGGATACTTCAAA--GATGCTGCCTTCGT-CAAC 295 ** * * ** * * * ** ** ** *** * * consensus_3450#0 TCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCA 417 consensus_3450#1 TCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCA 404 consensus_3450#2 TACCTTAAGTATCTGCTGTACTGGAAGGAGCCGGAGTACGCGA-AATACCTCAAGTTTCC 354 * * * *** ** * *** * * ** * ** *** consensus_3450#0 TTCCCG-CTACACCA-CACACCGTTCGATCGTTCG-GCGTTTTGGGCTAGAGCACCCTTT 474 consensus_3450#1 TTCCCG-CTACACCA-CACACCGTTCGATCGTTCG-GCGTTTTGGGCTAGAGCACCCTTT 461 consensus_3450#2 CATGTGTCTGTACTTTCTCGATCTGCTGCAGTACGAGCACTTTCGGCGCGAGA---TCGT 411 * ** ** * * * * ** ** ** *** *** *** * consensus_3450#0 CAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCT 534 consensus_3450#1 CAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCT 521 consensus_3450#2 CAGCGCACAGTGCTGCAAGTTTATCGACGACCAGGCGAT-CCTGCTGTGGCAGCACTAC- 469 *** ** * * * *** * * * * ** ** * ** ** * ** * consensus_3450#0 ATTCGGTAATA---ACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCT 591 consensus_3450#1 ATTCGGTAATA---ACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCT 578 consensus_3450#2 ACCCGGCGGCGCACGCGGCTAACCGCGCTCGGGAC-CACCAGCCTGACGGGGCTGGCGGT 528 * *** *** * * * ** * **** ** * * * * consensus_3450#0 TTCCGATCAAAT--TCAGGAAAACTGCACATACATACCACACACACACACG-CCTAGACA 648 consensus_3450#1 TTCCGATCAAAT--TCAGGAAAACTGCACATACATACCACACACACACACG-CCTAGACA 635 consensus_3450#2 GGGCGGCCAGCCGGTCGGGGGCGGTGTCCA-AGGGACGCTACTATCGAACGATCCCGCCA 587 ** ** ** ** ** ** * ** ** * *** * * ** consensus_3450#0 TACGTAAACAAACGCACACATACATTAGGGC 679 consensus_3450#1 TACGTAAACAAACGCACAC------------ 654 consensus_3450#2 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||