These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [GGCTTCTTCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGTATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAAATCATCAACTGTGTATCAAAGCAAAAGAATAGCGCTTTCGGTGGTAACTTGGTGAAGCGTTCCACAAGCGCTCCGTATCTGCAGTAACGCTTCGACGGCCCACAGTATGGCCTACCTTTCCGATGTAGATCTCGCAACGCTACACCAGTCACGCCTCGAGGAGCGCGTACAGTATCGGCTGTCGGCGCTTTGGACGCACGGAGCGGAATCGGGCCGGGATTATCAGCGATCGTTACCAGCAGTGTCGTCATCCGCGTCATCGTCGAGCACGTCATTAACAATGTTTG] [+] EMBL BX626630 [GGCTTCTTCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGTATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAAATCATCAACTGTGTATCAAAGCAAAAGAATAGCGCTTTCGGTGGTAACTTGGTGAAGCGTTCCACAAGCGCTCCGTATCTGCAGTAACGCTTCGACGGCCCACAGTATGGCCTACCTTTCCGATGTAGATCTCGCAACGCTACACCAGTCACGCCTCGAGGAGCGCGTACAGTATCGGCTGTCGGCGCTTTGGACGCACGGAGCGGAATCGGGCCGGGATTATCAGCGATCGTTACCAGCAGTGTCGTCATCCGCGTCATCGTCGAGCACGTCATTAACAATGTTTG] consensusID : consensus_3457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [AGAATTCCGCACGANTGTAGGAGAGGATGTAGTGGCTTCTNCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCGTGGTTGTTGATCCCCGAGCGTCCGTTATTATGCTCCAAAGCCAAAGACCACAGTGTGTATGTGTGTGCGTGCCGACATGGGCAGTGTGAAGGTGGAGGTTGGTTAACCGCCGGTGGGCCGGAANAAAGTTCATTCCACGCCTGGTGGTTCATTCCAGGAGGGCNCAAANGGAACTTAGCCGGCCNTTCTCCCGAGNTGGGGTAAACTTTGGGGNTGAAACGCNGGTTCCCAAGCAAAGGCACGGCCTCACGGATATTCCTCGGCCAGGNGAAGCGNANTTCCGAAACNGGGACCCCACCAAGGAG] [+] EMBL BX469765 [AGAATTCCGCACGANTGTAGGAGAGGATGTAGTGGCTTCTNCGGTTTTACCAGTTCGTCGTCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCGTGGTTGTTGATCCCCGAGCGTCCGTTATTATGCTCCAAAGCCAAAGACCACAGTGTGTATGTGTGTGCGTGCCGACATGGGCAGTGTGAAGGTGGAGGTTGGTTAACCGCCGGTGGGCCGGAANAAAGTTCATTCCACGCCTGGTGGTTCATTCCAGGAGGGCNCAAANGGAACTTAGCCGGCCNTTCTCCCGAGNTGGGGTAAACTTTGGGGNTGAAACGCNGGTTCCCAAGCAAAGGCACGGCCTCACGGATATTCCTCGGCCAGGNGAAGCGNANTTCCGAAACNGGGACCCCACCAAGGAG] consensusID : consensus_3457#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CCGCGTTTCAGTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGACTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGAATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAA] [+] EMBL BM616793 [CCGCGTTTCAGTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCCCTGAGCTTGACTCGAATTAATAAGACTGTTTGACTGCCGAAGCACAGAACCTCCAGCAAGGCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTCTATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGATTACCCCGCCGTGTTGTTGATCCCCGAGCTCCGTTATTATGCTCCAAACCAAAGACCACAGTGTGAATGTGTGTGCGTGCGAATGGGCAGTGTGAGTGAGTGTACGCGGTGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3457#0 ---------------------------------GGCTTCTTCGGTTTTACCAGTTCGTCG 27 consensus_3457#2 ------------------------------------------------------------ consensus_3457#1 AGAATTCCGCACGANTGTAGGAGAGGATGTAGTGGCTTCTNCGGTTTTACCAGTTCGTCG 60 consensus_3457#0 TCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCC 87 consensus_3457#2 --------------CCGCGTTTCAGTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCC 46 consensus_3457#1 TCTCGTAATGAATTAGTCGTTCGTTTGAGCGTACTTACGACCCCGGTGCGGTGTTCCTCC 120 **** *********************************** consensus_3457#0 CTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAG 147 consensus_3457#2 CTGAGCTTGACTCGAATTAATAAGACTGTTTGACTGCCGAAGCACAGAACCTCCAGCAAG 106 consensus_3457#1 CTGAGCTTGACTCGAATTAATAAGACTGTTTGGCTGCCGAAGCACAGAACCTCCAGCAAG 180 ******************************** *************************** consensus_3457#0 GCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTC 207 consensus_3457#2 GCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTC 166 consensus_3457#1 GCATAAGGGGCCGTTTTCAGTGTGTGCGTGTGTTTGTTAGTGGTTCTTTGTTTGCAATTC 240 ************************************************************ consensus_3457#0 TATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGA 267 consensus_3457#2 TATTTGCAAACCGTGCGGCCAATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGA 226 consensus_3457#1 TATTTGCAAACCGTGCGGC-AATGTGCGGCGTGTTTCAATCGGCATTCAGAGTCCGGTGA 299 ******************* **************************************** consensus_3457#0 TTACCCCGCCGTGTTGTTGATCCCCGAGC-TCCGTTATTATGCTCCAAA-CCAAAGACCA 325 consensus_3457#2 TTACCCCGCCGTGTTGTTGATCCCCGAGC-TCCGTTATTATGCTCCAAA-CCAAAGACCA 284 consensus_3457#1 TTACCCCGCGTGGTTGTTGATCCCCGAGCGTCCGTTATTATGCTCCAAAGCCAAAGACCA 359 ********* ***************** ******************* ********** consensus_3457#0 CAGTGTGTATGTGTGTGCGTGCGAA--TGGGCAGTGTGAGTGAGTGTACGCGGTGCGAAA 383 consensus_3457#2 CAGTGTGAATGTGTGTGCGTGCGAA--TGGGCAGTGTGAGTGAGTGTACGCGGTGCGAA- 341 consensus_3457#1 CAGTGTGTATGTGTGTGCGTGCCGACATGGGCAGTGTGAA-----------GGTGGAGGT 408 ******* ************** * ************ **** consensus_3457#0 TCATCAACTGTGTATCAAAGCAAAAGAATAGCGCTTTCGGTGGTAACTTGGTGAAGCGTT 443 consensus_3457#2 ------------------------------------------------------------ consensus_3457#1 TGGTTAACCGCCGGT--GGGCCGGAANAAAGTTCATTCCACG----CCTGGTGGTTCATT 462 consensus_3457#0 CCACAAGCGCTCCGTATCTGCAGTAACGCTTCGACGGCCCACAGTATGGCCTACCTTTCC 503 consensus_3457#2 ------------------------------------------------------------ consensus_3457#1 CCAGGAGGGCNCA--------AANGGAACTTAGCCGGCC--------NTTCTCCCGAGNT 506 consensus_3457#0 GATGTAGA-TCTCGCAACGCTACACCAGTCACGCCTCGAGGAGCGCGTACAGTATCGGCT 562 consensus_3457#2 ------------------------------------------------------------ consensus_3457#1 GGGGTAAACTTTGGGGNTGAAACGCNGGTT----CCCAAGCAAAG-GCACGGCCTCACGG 561 consensus_3457#0 GTCGGCGCTTTGGACGCACGGAGCGGAATCGGGCCGGGATTATCAGCGATCGTTACCAGC 622 consensus_3457#2 ------------------------------------------------------------ consensus_3457#1 AT--ATTCCTCGGCCAGGNGAAGCGNANTT---CCGAAA----CNGGGACCCCACCAAGG 612 consensus_3457#0 AGTGTCGTCATCCGCGTCATCGTCGAGCACGTCATTAACAATGTTTG 669 consensus_3457#2 ----------------------------------------------- consensus_3457#1 AG--------------------------------------------- 614 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||