These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [GCGGGAATCCCTTAGCCCAGAATTCCCCGGGGTTTTAACGGCACAAGGTGTGTGGCTGTGTCCCACACCAGTAGCAAACATTGCACTGGCGCCCGCAGGCGGCTCATCTGCGGGGTGCAACCACTGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGTCGCCGACGGGCACAAGAGCACGAACGTCATCAAGTCGACCAGCAATGCGGACGAGACTGGAGCGGGTGTTGATTCACACGCCGGAGTCCCCGGAATTCCCTCTATTCCACACCCCGGGGGTGCACCCCGGCCGTGCCAGTCCCATTGCGATTGCCGCCGTAAGACAAACNAACCCGGGGTCGGTGGGTAAGCCCGGATTGGTTGCCTGGAAAGCACCACGAAAACAATCAAAACGGGCTGGGGTGCGAAGGG] [+] EMBL AL696493 [GCGGGAATCCCTTAGCCCAGAATTCCCCGGGGTTTTAACGGCACAAGGTGTGTGGCTGTGTCCCACACCAGTAGCAAACATTGCACTGGCGCCCGCAGGCGGCTCATCTGCGGGGTGCAACCACTGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGTCGCCGACGGGCACAAGAGCACGAACGTCATCAAGTCGACCAGCAATGCGGACGAGACTGGAGCGGGTGTTGATTCACACGCCGGAGTCCCCGGAATTCCCTCTATTCCACACCCCGGGGGTGCACCCCGGCCGTGCCAGTCCCATTGCGATTGCCGCCGTAAGACAAACNAACCCGGGGTCGGTGGGTAAGCCCGGATTGGTTGCCTGGAAAGCACCACGAAAACAATCAAAACGGGCTGGGGTGCGAAGGG] consensusID : consensus_3458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 298 fasta sequence [CATCCCAGGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGGCGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGGTGGCTGCTGCTCCCACACAGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCATCTGCCGGGGTGCAACCCACGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCGGTAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGT] [+] EMBL AGA281441 [CATCCCAGGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGGCGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGGTGGCTGCTGCTCCCACACAGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCATCTGCCGGGGTGCAACCCACGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACAGCGGTAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCGT] [-] EMBL BM579857 [ GGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGGCGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGGTGGCTGCTGCTCCCACACAGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCATCTGCCGGGGTGCAACCCACGGAACACAGTGTTAATACTAgcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3458#0 ------------------------------------------------------------ consensus_3458#1 CATCCCAGGAGCAGCAGCAGCGGTCCTCCTCCTCCCAGCAACTTCGAGGACCGGGGGCGG 60 consensus_3458#0 -----------GCGGGAATCCCTTAGCCCA-GAATTCCCCGGGGTTTTAACGGCACAAGG 48 consensus_3458#1 CGGCGACGGCGACGGGACCACCACCACCAACGCATCGTCTAGAGCAACCGCCACAAGTGG 120 ***** ** ** * * ** * * * * ** ** consensus_3458#0 TGTGTGGCTGTGTCCCACACCAGTAGCAAACATTGC-ACTGGCGCCCGCAGGCGGCTCAT 107 consensus_3458#1 TG-GCTGCTGC-TCCCACAC-AGCAGCAACCATTGCCACCGGCGCCCGCGGCGGCCTCAT 177 ** * **** ******** ** ***** ****** ** ********* * * ***** consensus_3458#0 CTGC-GGGGTGCAACCACTGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACA 166 consensus_3458#1 CTGCCGGGGTGCAACCCACGGAACACAGTGTAAATAGTACAAACGTCACTAGTATTAACA 237 **** *********** ***************************************** consensus_3458#0 GC------AGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCG 220 consensus_3458#1 GCGGTAGCAGCAGCAGCACCGCGGACAGGAACGGTGACACAAAATCGCGCTCACCCGTCG 297 ** **************************************************** consensus_3458#0 TCGCCGACGGGCACAAGAGCACGAACGTCATCAAGTCGACCAGCAATGCGGACGAGACTG 280 consensus_3458#1 T----------------------------------------------------------- 298 * consensus_3458#0 GAGCGGGTGTTGATTCACACGCCGGAGTCCCCGGAATTCCCTCTATTCCACACCCCGGGG 340 consensus_3458#1 ------------------------------------------------------------ consensus_3458#0 GTGCACCCCGGCCGTGCCAGTCCCATTGCGATTGCCGCCGTAAGACAAACNAACCCGGGG 400 consensus_3458#1 ------------------------------------------------------------ consensus_3458#0 TCGGTGGGTAAGCCCGGATTGGTTGCCTGGAAAGCACCACGAAAACAATCAAAACGGGCT 460 consensus_3458#1 ------------------------------------------------------------ consensus_3458#0 GGGGTGCGAAGGG 473 consensus_3458#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||