These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [CCGGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTGTGCGTACGTGTGTGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGCACCAGCCCAGCTTTAAGCCCAGTCGTCCCTGGTTCGTTTCCGTCAGTTCTGGTCGGTGTGCTGCTGCAAACCTTCCCCGTTTCCCGTTTCTCATCCGGCTGTTCGGGTCGCTCACTCGCTGGTCTGCTGGTTTGCAGACGAAGCAAAGTGACCGCCGCACAATCTCGCTTCCCCTTCTCCTCTACCTCCGCGCTGCTTCAACGTCGTCGGGTGGGGAGCGAAAATCGACCAGCCTTTGTGGGCTAGAGAGTTTTGCCTTCCCTGCTTTTTGGCTGCCCCGTAGGCTGTGCTGTGCCTCGGCTAACACAATCGGAAAAGTGTACGCTTGGCACCGTCGTCGAAGCAGGAAGCATCGCAAGAACACAGAGAGACTTTAATATATGTAAGTGCCGTCGCCGTTCGAGATGCAACACTTCAATCTATCTGATTGAATGTGCTGTGCGTTTATAGAGTGTAGTACACCAGAAGTGCATCGTGCAACGGAGGTGATGCAAAAGCAACAAACCGTCCCGGCAGAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGC] [+] EMBL BM616618 [CCGGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTGTGCGTACGTGTGTGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGCACCAGCCCAGCTTTAAGCCCAGTCGTCCCTGGTTCGTTTCCGTCAGTTCTGGTCGGTGTGCTGCTGCAAACCTTCCCCGTTTCCCGTTTCTCATCCGGCTGTTCGGGTCGCTCACTCGCTGGTCTGCTGGTTTGCAGACGAAGCAAAGTGACCGCCGCACAATCTCGCTTCCCCTTCTCCTCTACCTCCGCGCTGCTTCAACGTCGTCGGGTGGGGAGCGAAAATCGACCAGCCTTTGTGGGCTAGAGAGTTTTGCCTTCCCTGCTTTTTGGCTGCCCCGTAGGCTGTGCTGTGCCTCGGCTAACACAATCGGAAAAGTGTACGCTTGGCACCGTCGTCGAAGCAGGAAGCATCGCAAGAACACAGAGAGACTTTAATATATGTAAGTGCCGTCGCCGTTCGAGATGCAACACTTCAATCTATCTGATTGAATGTGCTGTGCGTTTATAGAGTGTAGTACACCAGAAGTGCATCGTGCAACGGAGGTGATGCAAAAGCAACAAACCGTCCCGGCAGAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGC] consensusID : consensus_3460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CTCAGGCCACGAATTCGCACGAGGACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTATTTTTATCTAGTTGTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGGTCGTGTGCGTACGTGTGTAGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGGACCAGCCCAGCTTTAAGCCCAGGTCGTCGTGCCCGGCAGAGAGAGTGAAACGCAAGCAGTTAATCCGTATGGGAAACTAAGCAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAACGGATAATAATTGTGCGTGCGTGTCGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATATAGACACAACGGTTTCGAAATGAATACCCATCTGCGAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAACAAAGCAGGCACACAAAGAGTATTTACANACACNACGTTCTTCGACATGGCAAAATCACCGTATACTTGGGGAANAACGGTGACTTCGTCAGAACCACTCTCANGCACCATGTCGGACTCCCGCATCAATCGGTGTACATNCTAGCATA] [+] EMBL BX469175 [CTCAGGCCACGAATTCGCACGAGGACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTATTTTTATCTAGTTGTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGGTCGTGTGCGTACGTGTGTAGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGGACCAGCCCAGCTTTAAGCCCAGGTCGTCGTGCCCGGCAGAGAGAGTGAAACGCAAGCAGTTAATCCGTATGGGAAACTAAGCAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAACGGATAATAATTGTGCGTGCGTGTCGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATATAGACACAACGGTTTCGAAATGAATACCCATCTGCGAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAACAAAGCAGGCACACAAAGAGTATTTACANACACNACGTTCTTCGACATGGCAAAATCACCGTATACTTGGGGAANAACGGTGACTTCGTCAGAACCACTCTCANGCACCATGTCGGACTCCCGCATCAATCGGTGTACATNCTAGCATA] consensusID : consensus_3460#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [GCCGGAATTGGAGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTCCCGGCAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAAGGATAATAATTGTGCGTGCGTGTGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATTAGACACAACGGTTTCGAAATGAATACCCATCTGCAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAAAAAGCAGGCAACAAGAGTATTTAAGAAAAGTTCTTCGAATGGCAAAATCACCGTATACTTGGGAAAACGTGACTTCGTCGACCACATCACGCATGTCGATCCGATAGATGGTGTCGTGCTGATAGATCCCGACTATGTGAAGGAGCGGAAAGTTTTCGGACACGTACTGGCCGCCTTCCGGTACGGGCGTGAAGATCTGGACGTGCTGGGACTAACCTTCCGAAANGACCTGTATCTGGCATCCGAACAG] [+] EMBL BX624548 [GCCGGAATTGGAGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTCCCGGCAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAAGGATAATAATTGTGCGTGCGTGTGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATTAGACACAACGGTTTCGAAATGAATACCCATCTGCAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAAAAAGCAGGCAACAAGAGTATTTAAGAAAAGTTCTTCGAATGGCAAAATCACCGTATACTTGGGAAAACGTGACTTCGTCGACCACATCACGCATGTCGATCCGATAGATGGTGTCGTGCTGATAGATCCCGACTATGTGAAGGAGCGGAAAGTTTTCGGACACGTACTGGCCGCCTTCCGGTACGGGCGTGAAGATCTGGACGTGCTGGGACTAACCTTCCGAAANGACCTGTATCTGGCATCCGAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3460#1 CTCAGGCCACGAATTCGCACGAGGACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGT 60 consensus_3460#2 ------------------------------------------------------------ consensus_3460#0 -------------------------------------------------------CCGGG 5 consensus_3460#1 TTTTTTATTTTTATCTAGTTGTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGGTCGT 120 consensus_3460#2 ------------------------------------------------------------ consensus_3460#0 AACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGG-TCGT 64 consensus_3460#1 GTGCGTACGTGTGTAGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGG 180 consensus_3460#2 --------GCCGGAATTGGAGGAACAATAATTC--CGGAATTTATTTCGTTTTC--TTGC 48 consensus_3460#0 GTGCGTACGTGTGT-GCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGC 123 * * * * * * ** * * *** ***** * consensus_3460#1 ACCAGCCCAGCTTTAAGCCCAGGTCGTCGTGCCCGGCAGAGAGAGTGAAACGCAAGCAGT 240 consensus_3460#2 ATCGGA--AGTGATCAATCACGGTCGTC----CCGGCAGAGAGAGTGAAACGCAA-CAGT 101 consensus_3460#0 ACCAGCCCAGCTTTAAGCCCAG-TCGTC--CCTGGTTCGTTTCCGTCAGTTCTGGTCGGT 180 * * * ** * * * * ***** * * ** * * ** consensus_3460#1 TAATCCGTATGGGAAACTAAGCAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCA 300 consensus_3460#2 TAATCCGTATGGGAAACTAA-CAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCA 160 consensus_3460#0 --GTGCTGCTGCAAACCTTCCCCGTTTCCCGTTTCTCATCCGGCTGTTCGGGTCGCTCAC 238 * * ** ** ** * * * ** * * ** ** **** consensus_3460#1 GTGCTG-TGTGGTG-TATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGA 358 consensus_3460#2 GTGCTG-TGTGGTG-TATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGA 218 consensus_3460#0 TCGCTGGTCTGCTGGTTTGCAGACGAAGCAAAGTGAC-----CGCCGCACAAT--CTCGC 291 **** * ** ** * ** * ****** * ** *** ** * * * * consensus_3460#1 AGAAAAAACGGATAATAATTGTGCGTGCGTGTCGTGTGTGTGAGAGAGTGTGTGGAAAGC 418 consensus_3460#2 AGAAAAAA-GGATAATAATTGTGCGTGCGTGT-GTGTGTGTGAGAGAGTGTGTGGAAAGC 276 consensus_3460#0 TTCCCCTTCTCCTC-TACCTCCGCGCTGCTTCAACGT-CGTCGGGTGGGGAGCGAAAA-- 347 * ** * *** * ** ** * * * * * *** consensus_3460#1 CCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATATAGACACAACGGTTTCG 478 consensus_3460#2 CCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAAT-TAGACACAACGGTTTCG 335 consensus_3460#0 TCGACCAGCCTTTGTGGGCTAGAGAGTTTTGCCTTCCCTGCT----TTTTGGCTGCCCCG 403 * * *** * * * * * * * * * ** * * * ** consensus_3460#1 AAATGAATACCCATCTGCGAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCT 538 consensus_3460#2 AAATGAATACCCATCTGC-AAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCT 394 consensus_3460#0 TAGGCTGTGCTGTGCCTC----GGCTAACAC---AATCGGAAAAGTGTACGCTTGGCACC 456 * * * * * * * * * *** * * * * consensus_3460#1 GACGTTGACGAGGGTAGC-TCG-AACAAAGCAGGCACACAAAGAGTATTTACANACACNA 596 consensus_3460#2 GACGTTGACGAGGGTAGC-TCG-AA-AAAGCAGGCA-ACAA-GAGTATTTAAGAAAA--- 446 consensus_3460#0 GTCGTCGAAGCAGGAAGCATCGCAAGAACACAGAGAGACTT-TAATATATGTAAGTGCCG 515 * *** ** * ** *** *** ** ** *** * ** * *** * consensus_3460#1 -CGTTCTTCGACATGGCAAAATCACCGTATACTTGGGGAANAACGGTGACTTCGTCAGAA 655 consensus_3460#2 --GTTCTTCGA-ATGGCAAAATCACCGTATACTTGGGAAAACGTGACTTCGTCGACCACA 503 consensus_3460#0 TCGCCGTTCGAGATG-CAACACTTCAATCTATCTGATTGAATGTGCTG--TGCGTTTATA 572 * ***** *** *** * * * ** ** * * ** * consensus_3460#1 CCACTCTCANGCACCATGTCGG-ACTCCCGCATCAATCGGTGTACATNCTAGCATA---- 710 consensus_3460#2 TCACGCATGTCGATCCGATAGATGGTGTCGTGCTGATAGATCCCGACTATGTGAAGGAGC 563 consensus_3460#0 GAGTGTA-GTACACCAGAAGTGCA-TCGTGCAACGG-AGGTGATGCAAAAGCAACAAACC 629 * * * * * * * consensus_3460#1 ------------------------------------------------------------ consensus_3460#2 GGAAAGTTTTCGGACACGTACTGGCCGCCTTCCGGTACGGGCGTGAAGATCTGGACGTGC 623 consensus_3460#0 GTCCCGGCAGAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTT 689 consensus_3460#1 -------------------------------------------- consensus_3460#2 TGGGACTAACCTTCCGAAANGACCTGTATCTGGCATCCGAACAG 667 consensus_3460#0 GGCTTTTAGTTGCCTTGACAGGCGCGCTGC-------------- 719 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||