These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [GAATCGGCACGAGGGTNATTTGTACAGTGCTTTAACATTATCCGTGTAGAGCTCGCACTCAGGCGCAGGCTCTGGAGTCAAATTTGACACTATATTTACCGAAAACCGCGGCGCAGTCCGTGGCGTTAGACAGACCACACTGCCTTTTAATTTCGTTTTAAAAGGCTAATCACACAAACAAACCCACACACACGCATACAGTGTTCTTTTTGAGTAGTTTGGTTACATCTTGATCCGATAGCAGGCAACAGGATAGGTGTTGTTAGGAAATGTTGGAGTTTTCCGTTTCCGTTAGCTTTGTTTGTTCGAAGAGGAGATGTGTGATGAAACGGAAATATCTGCTGCGAGGAAGAAAAGAAGGCTCGCGCTCTATCAATCCGTGCGCAACTTTATAGAATTAGAATTTAGAGCAAACAANAGGAAAACAAAAGCATAACACATTATCATTATCATCAAGCTCTAGGTAAGCAAGCGANTATTGGTGGTGAGAACAAGTGGCACGGAACACAGAAGCGGTGCGCATTACATTGCATGAACCTACTACTACCGAGTGAAAAGGCCGGCGCGAGGATTGAACCTGCGGTATCTTAGGCATATAAGGATTC] [+] EMBL BX469578 [GAATCGGCACGAGGGTNATTTGTACAGTGCTTTAACATTATCCGTGTAGAGCTCGCACTCAGGCGCAGGCTCTGGAGTCAAATTTGACACTATATTTACCGAAAACCGCGGCGCAGTCCGTGGCGTTAGACAGACCACACTGCCTTTTAATTTCGTTTTAAAAGGCTAATCACACAAACAAACCCACACACACGCATACAGTGTTCTTTTTGAGTAGTTTGGTTACATCTTGATCCGATAGCAGGCAACAGGATAGGTGTTGTTAGGAAATGTTGGAGTTTTCCGTTTCCGTTAGCTTTGTTTGTTCGAAGAGGAGATGTGTGATGAAACGGAAATATCTGCTGCGAGGAAGAAAAGAAGGCTCGCGCTCTATCAATCCGTGCGCAACTTTATAGAATTAGAATTTAGAGCAAACAANAGGAAAACAAAAGCATAACACATTATCATTATCATCAAGCTCTAGGTAAGCAAGCGANTATTGGTGGTGAGAACAAGTGGCACGGAACACAGAAGCGGTGCGCATTACATTGCATGAACCTACTACTACCGAGTGAAAAGGCCGGCGCGAGGATTGAACCTGCGGTATCTTAGGCATATAAGGATTC] consensusID : consensus_347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [AAGGTTTCGCAGTGTGAAGCCGCGCGCGTTTTAGCCTAAGTCCCGGGCGCCCGATGTCTGCCTGTACCCACTTGCGGGCTTGGCTTTCAGTGACTAATTGATTTCCCCCCATAGCAGGATAGTCAATCCTGCGTATGGCGGCACGGTCCATTTGGGGATTGAACCCATGACGGGCATGTTGTTTATGTCGTACGAGTTGACGACTGTACTACGAGACCGGCTATTATTTATAATAAAAAATATGTGTGGTTTTTTGGCAAGATTGTGGTTAGCGATGTGTGGAACTGTGCCTTAAGTTTCAATAAAGTGTTAAAATATCAAACAAAAAAAAAA] [+] EMBL CF541633 [AAGGTTTCGCAGTGTGAAGCCGCGCGCGTTTTAGCCTAAGTCCCGGGCGCCCGATGTCTGCCTGTACCCACTTGCGGGCTTGGCTTTCAGTGACTAATTGATTTCCCCCCATAGCAGGATAGTCAATCCTGCGTATGGCGGCACGGTCCATTTGGGGATTGAACCCATGACGGGCATGTTGTTTATGTCGTACGAGTTGACGACTGTACTACGAGACCGGCTATTATTTATAATAAAAAATATGTGTGGTTTTTTGGCAAGATTGTGGTTAGCGATGTGTGGAACTGTGCCTTAAGTTTCAATAAAGTGTTAAAATATCAAACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_347#0 GAATCGGCACGAGGGTNATTTGTACAGTGCTTTAACATTATCCGTGTAGAGCTCGCACTC 60 consensus_347#1 ------------------------------------------------------------ consensus_347#0 AGGCGCAGGCTCTGGAGTCAAATTTGACACTATATTTACCGAAAACCGCGGCGCAGTCCG 120 consensus_347#1 -----AAGGTTTCGCAGTGTGAAGCCGCGCGCGTTTTAGCCTAAGTCCCGG----GCGCC 51 *** * * *** * * * **** * ** * *** * * consensus_347#0 TGGCGTTAGACAGACCACACTGCCTTTTAATTTCGTTTTAAAAGGCTAATCACACAAACA 180 consensus_347#1 CGATGTCTGCCTGTACCCACT---TGCGGGCTTGGCTTTCAGTGACTAATTG-----ATT 103 * ** * * * * **** * ** * *** * * ***** * consensus_347#0 AACCCACACACACGCATACAGTGTTCTTTTTGAGTAGTTTGGTTACATCTTGATCCGATA 240 consensus_347#1 TCCCCCCATAGCAGGATA----GTCAATCCTGCGTATGGCGGCACGGTCC--ATTTGGGG 157 *** ** * * *** ** * ** *** ** ** ** * consensus_347#0 GCAGGCAACAGGATAGGTGTTGTTAGGAAATGTTGGAGTTTTCCGTTTCCGTTAGCTTTG 300 consensus_347#1 ATTGAACCCATGACGGGCAT-GTT-GTTTATGTCGTA----CGAGTTGACGACTGTACTA 211 * ** ** ** * *** * **** * * *** ** * * consensus_347#0 TTTGTTCGAAGAGGAGATGTGTGATGAAACGGAAATATCTGCTGCGAGGAAGAAAAGAAG 360 consensus_347#1 CGAGACCG--GCTATTATTTATAATAAAA--AATATGTGTGGTTTTTTGGCAAGATTGTG 267 * ** * ** * * ** *** * ** * ** * * * * * consensus_347#0 GCTCGCGCTCTATCAATCCGTGCGCAACTTTATAGAATTAGAATTTAGAGCAAACAANAG 420 consensus_347#1 GTTAGCGATGTGTGGAACTGTGCCTTAAGTTTCA--ATAAAGTGTTAAAATATCAAACAA 325 * * *** * * * * * **** * ** * ** * *** * * ** * consensus_347#0 GAAAACAAAAGCATAACACATTATCATTATCATCAAGCTCTAGGTAAGCAAGCGANTATT 480 consensus_347#1 AAAAAAAA---------------------------------------------------- 333 **** ** consensus_347#0 GGTGGTGAGAACAAGTGGCACGGAACACAGAAGCGGTGCGCATTACATTGCATGAACCTA 540 consensus_347#1 ------------------------------------------------------------ consensus_347#0 CTACTACCGAGTGAAAAGGCCGGCGCGAGGATTGAACCTGCGGTATCTTAGGCATATAAG 600 consensus_347#1 ------------------------------------------------------------ consensus_347#0 GATTC 605 consensus_347#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||