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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 818 fasta sequence
[CCGGGGGCGGGGTGTTGGCACGATATAGACCGCAGGAAATAATATTGGTAAACATCGATCTGTCAACAGCAGATCGACCTAACTCCCACTTTACCCGTCAGATGGCGCACTAGATGCACCGAAAGGGACGACAGGGTTAGCTTGTGCGACAACTAGTTCTCCCAGAATAGGACCAATCACGAAGCGGTTCAACTAGGGTCAAGTTCGCACAGCTGATCGAGAACAGGGCGCCATCGCTAAACGCAAAGTTAGTTGCAAATTAGATCACGGAAAGAAAGCACCAATTTTAAAACTGCTTGAAATTTGCTTGAAATCTGCGTGAATAAACAACAGTTTGTAAAATTATCTTTACCGTTTGCGACTCACTTAATCGAGTGCTACACACGTAGCAACAATAACAAACAAATACTTCAATCTAACTAGACAAACATATACTAGACAGCAAGCAATTTGTAACACAGCCAACACACGTAAAATGAAAGAATTAGGATGGGGAAACAAAAAGGGAGTCAAAGAACTGAAAGAAGAGGGGGCGAAGGGATTGAGGGGGAATATGAAAATCAAACATACCAG-AGGCACTGTTGAAGCGATGCAGGGATCGAAAAAACGGATCATTGGTGCCATACAGCGTTCTTCTCGACGGGATTTGAAGGAAATCGCGGCGTCGAAGAAAGCGAGTTGGCGCGTACAGCGGTATTCTGTTAAGAAGTGAAGGACAATCAATCTCGTTCCGAAGCAAACCACTKATAAGCAAAGCTTGAAAGCAGANCGACGATCATGCAGTGTCATCAATCCAAGCATACGGCATCGGACTTCAT]
[+] EMBL BM646623 [CCGGGGGCGGGGTGTTGGCACGATATAGACCGCAGGAAATAATATTGGTAAACATCGATCTGTCAACAGCAGATCGACCTAACTCCCACTTTACCCGTCAGATGGCGCACTAGATGCACCGAAAGGGACGACAGGGTTAGCTTGTGCGACAACTAGTTCTCCCAGAATAGGACCAATCACGAAGCGGTTCAACTAGGGTCAAGTTCGCACAGCTGATCGAGAACAGGGCGCCATCGCTAAACGCAAAGTTAGTTGCAAATTAGATCACGGAAAGAAAGCACCAATTTTAAAACTGCTTGAAATTTGCTTGAAATCTGCGTGAATAAACAACAGTTTGTAAAATTATCTTTACCGTTTGCGACTCACTTAATCGAGTGCTACACACGTAGCAACAATAACAAACAAATACTTCAATCTAACTAGACAAACATATACTAGACAGCAAGCAATTTGTAACACAGCCAACACACGTAAAATGAAAGAATTAGGATGGGGAAACAAAAAGGGAGTCAAAGAACTGAAAGAAGAGGGGGCGAAGGGATTGAGGGGGAATATGAAAATCAAACATACCAG AGGCACTGTTGAAGCGATGCAGGGATCGAAAAAACGGATCATTGGTGCCATACAGCGTTCTTCTCGACG ]
[+] EMBL AGA283105 [ CGTTAAATGAAAGAATTAGGATGGGGAAACAAAAAGGGAGTYAAAGAACTGAAGGAAGAGGGGGCGAAGGGATTNAGGGGGAATATGAAAATCAAACACACCAGAAGGCACTGTTGAAGCGATGGAGGGATCGATAAAACGTATCATTGGTGCCATACAGCGTTCTTCTCGACGGGATTTGAAGGAAATCGCGGCGTCGAAGAAAGCGAGTTGGCGCGTACAGCGGTATTCTGTTAAGAAGTGAAGGACAATCAATCTCGTTCCGAAGCAAACCACTKATAAGCAAAGCTTGAAAGCAGANCGACGATCATGCAGTGTCATCAATCCAAGCATACGGCATCGGACTTCAT]
consensusID : consensus_3480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[GATCTGTTAACAGCAGATCGACTCAACTCCCACTTTACCCGTCAGATGGCGTACTAAATACATAGAAAGNGACGACAGGGTTAGCTTGTGCGACAACTAGTTCTCCCAGAATAGGACCAATCAGGAAGCGGTTCAACTAGGGTCAAGTTCGCACAGCTGATCGAGAACAGGGCGCCATCGCTAAACGCAAAATTAGTTGCAAATTAGATCACGGAAAGAAAGCACCAATTTTAAAAACTGCTTGAAATCTGTTTCAAATCTGCTTGAAATCTGATTGAATAAACGACAGTTTGTAAA]
[-] EMBL AGA281849 [GATCTGTTAACAGCAGATCGACTCAACTCCCACTTTACCCGTCAGATGGCGTACTAAATACATAGAAAGNGACGACAGGGTTAGCTTGTGCGACAACTAGTTCTCCCAGAATAGGACCAATCAGGAAGCGGTTCAACTAGGGTCAAGTTCGCACAGCTGATCGAGAACAGGGCGCCATCGCTAAACGCAAAATTAGTTGCAAATTAGATCACGGAAAGAAAGCACCAATTTTAAAAACTGCTTGAAATCTGTTTCAAATCTGCTTGAAATCTGATTGAATAAACGACAGTTTGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3480#0 CCGGGGGCGGGGTGTTGGCACGATATAGACCGCAGGAAATAATATTGGTAAACATCGATC 60
consensus_3480#1 --------------------------------------------------------GATC 4
****
consensus_3480#0 TGTCAACAGCAGATCGACCTAACTCCCACTTTACCCGTCAGATGGCGCACTAGATGCACC 120
consensus_3480#1 TGTTAACAGCAGATCGACTCAACTCCCACTTTACCCGTCAGATGGCGTACTAAATACATA 64
*** ************** *************************** **** ** **
consensus_3480#0 GAAAGGGACGACAGGGTTAGCTTGTGCGACAACTAGTTCTCCCAGAATAGGACCAATCAC 180
consensus_3480#1 GAAAGNGACGACAGGGTTAGCTTGTGCGACAACTAGTTCTCCCAGAATAGGACCAATCAG 124
***** *****************************************************
consensus_3480#0 GAAGCGGTTCAACTAGGGTCAAGTTCGCACAGCTGATCGAGAACAGGGCGCCATCGCTAA 240
consensus_3480#1 GAAGCGGTTCAACTAGGGTCAAGTTCGCACAGCTGATCGAGAACAGGGCGCCATCGCTAA 184
************************************************************
consensus_3480#0 ACGCAAAGTTAGTTGCAAATTAGATCACGGAAAGAAAGCACCAATTTTAAAA-------- 292
consensus_3480#1 ACGCAAAATTAGTTGCAAATTAGATCACGGAAAGAAAGCACCAATTTTAAAAACTGCTTG 244
******* ********************************************
consensus_3480#0 ----CTGCTTGAAATTTGCTTGAAATCTGCGTGAATAAACAACAGTTTGTAAAATTATCT 348
consensus_3480#1 AAATCTGTTTCAAATCTGCTTGAAATCTGATTGAATAAACGACAGTTTGTAAA------- 297
*** ** **** ************* ********* ************
consensus_3480#0 TTACCGTTTGCGACTCACTTAATCGAGTGCTACACACGTAGCAACAATAACAAACAAATA 408
consensus_3480#1 ------------------------------------------------------------
consensus_3480#0 CTTCAATCTAACTAGACAAACATATACTAGACAGCAAGCAATTTGTAACACAGCCAACAC 468
consensus_3480#1 ------------------------------------------------------------
consensus_3480#0 ACGTAAAATGAAAGAATTAGGATGGGGAAACAAAAAGGGAGTCAAAGAACTGAAAGAAGA 528
consensus_3480#1 ------------------------------------------------------------
consensus_3480#0 GGGGGCGAAGGGATTGAGGGGGAATATGAAAATCAAACATACCAGAGGCACTGTTGAAGC 588
consensus_3480#1 ------------------------------------------------------------
consensus_3480#0 GATGCAGGGATCGAAAAAACGGATCATTGGTGCCATACAGCGTTCTTCTCGACGGGATTT 648
consensus_3480#1 ------------------------------------------------------------
consensus_3480#0 GAAGGAAATCGCGGCGTCGAAGAAAGCGAGTTGGCGCGTACAGCGGTATTCTGTTAAGAA 708
consensus_3480#1 ------------------------------------------------------------
consensus_3480#0 GTGAAGGACAATCAATCTCGTTCCGAAGCAAACCACTKATAAGCAAAGCTTGAAAGCAGA 768
consensus_3480#1 ------------------------------------------------------------
consensus_3480#0 NCGACGATCATGCAGTGTCATCAATCCAAGCATACGGCATCGGACTTCAT 818
consensus_3480#1 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||