These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 748 fasta sequence [CCGCGGACGCGTGGGCAAAGCTGAAAACTTTACTGCACACATTTTTTTTACGATTTTGCCGGTGTTAAAACGGCGTAGCGATTGTACTTTCCGCCGTTTTACGTAAATTACGCGGCCGAACCGTGTAAAGGACACAAGTAAAGCGCTGGTTTTGGCGTGGCGCCCAGGAAACTTCTAGACAGCGAGTGTTGCACACGTACTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATTAAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTCCTGAAAATCAAATGCACCAACTGTGGCGAAGTGTCGGACAAGTGGCACGATCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTACACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAACCGATCGAGTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACATTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAATTCCGTTGGTGTGTACGAGTTTGAGTCCGATTTTATCAAGATGAAAAAGTGAATATTTGTTTGTTGAGAGGCAATAAGAAACCGTTGGATAA] [+] EMBL BM625586 [CCGCGGACGCGTGGGCAAAGCTGAAAACTTTACTGCACACATTTTTTTTACGATTTTGCCGGTGTTAAAACGGCGTAGCGATTGTACTTTCCGCCGTTTTACGTAAATTACGCGGCCGAACCGTGTAAAGGACACAAGTAAAGCGCTGGTTTTGGCGTGGCGCCCAGGAAACTTCTAGACAGCGAGTGTTGCACACGTACTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATTAAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTCCTGAAAATCAAATGCACCAACTGTGGCGAAGTGTCGGACAAGTGGCACGATCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTACACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAACCGATCGAGTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACATTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAATTCCGTTGGTGTGTACG ] [+] EMBL BX612015 [ CAGGAAACTTCTAGACAGCGAGTGTTGCACACGTATTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATTAAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTCCTGAAAATCAAATGCACCAACTGTGGCGAAGTGTCGGACAAGTGGCACGATCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTACACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAACCGATCGATTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACATTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAATTCCGTTGGTGTGTACGAGTTTGAGTCCGATTTTATCAAGATGAAAAAGTGAATATTTGTTTGTTGAGAGGCAATAAGAAACCGTTGGATAA] consensusID : consensus_3481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 116 fasta sequence [CATCGGTACTAATACAATAAACTAATCCTGGACAAGTGGCACGATTCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCC] [+] EMBL AGA281877 [CATCGGTACTAATACAATAAACTAATCCTGGACAAGTGGCACGATTCTGACCGAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAGTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3481#0 CCGCGGACGCGTGGGCAAAGCTGAAAACTTTACTGCACACATTTTTTTTACGATTTTGCC 60 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 GGTGTTAAAACGGCGTAGCGATTGTACTTTCCGCCGTTTTACGTAAATTACGCGGCCGAA 120 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 CCGTGTAAAGGACACAAGTAAAGCGCTGGTTTTGGCGTGGCGCCCAGGAAACTTCTAGAC 180 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 AGCGAGTGTTGCACACGTACTGCATCGCAGCCAAACATGGGAAAGATTGGCCTACAGATT 240 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 AAGGCAACGCTGGAAAACATCGAGACGCTGAAAACGAACCATCCGCACTACGCGTTCTTC 300 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 CTGAAAATCAAATGCACCAA--CTGTGGCGAAGTGTCGGACAAGTGGCACGAT-CTGACC 357 consensus_3481#1 --------CATCGGTACTAATACAATAAACTAATCCTGGACAAGTGGCACGATTCTGACC 52 ** * ** ** * * * * **************** ****** consensus_3481#0 GAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAG 417 consensus_3481#1 GAAGGCGAGCACGTCAACGAGGATTCGCGCAATCCGAAAGGATTCAATTTCTACATGAAG 112 ************************************************************ consensus_3481#0 TGCCGTATGTGCTCGCGCGAAAATAGCATCGACATCATTGAAGGCTCAAACGCAAGCTAC 477 consensus_3481#1 TGCC-------------------------------------------------------- 116 **** consensus_3481#0 ACGGAGCAGGATTCGGGCAAAAAGAAGACGATCGTTGCGTTCGATTGCCGCGGTGTGGAA 537 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 CCGATCGAGTTCAGTCCCCGGACCGGATGGATTGCGAAGGCGACCGAGAACGGGCCAACA 597 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 TTCGAGGACATCGATCTTTCGGAAGACGACTGGGTGGAGTACGATCAGAAGAACAACAAT 657 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 TCCGTTGGTGTGTACGAGTTTGAGTCCGATTTTATCAAGATGAAAAAGTGAATATTTGTT 717 consensus_3481#1 ------------------------------------------------------------ consensus_3481#0 TGTTGAGAGGCAATAAGAAACCGTTGGATAA 748 consensus_3481#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||