These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 744 fasta sequence [GTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCATGCTCATCACCACGGACAGCCATAATAGTGCGTAAGAGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACCCACACCCATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACCAAAAACAAAAGAGAGAAGAAAAGAAAACAAACGCACGATCAGGGAAGAGATAGAGAGGAAACTGTGTCAAAAAAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTATCCTTCCCGTTTTCACCCAAGTTGATGTTGATAAATCGAGAAATGCAAACGAACGAAGCATGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGNTTGATCAGACCCAAAAGATGCGTGTATAATAATCGGGTCGTGCGGGGTAGTATGTGGTTTTGTTACGTTTTTTTTTCTCCCCCTCCCCCCGCTTATGTCTCGTTACGTTATTATTTTGATTCGTTTATCATTTCGTTTAGTT] [+] EMBL BX627820 [GTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCATGCTCATCACCACGGACAGCCATAATAGTGCGTAAGAGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACCCACACCCATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACCAAAAACAAAAGAGAGAAGAAAAGAAAACAAACGCACGATCAGGGAAGAGATAGAGAGGAAACTGTGTCAAAAAAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTATCCTTCCCGTTTTCACCCAAGTTGATGTTGATAAATCGAGAAATGCAAACGAACGAAGCATGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGNTTGATCAG ] [+] EMBL AGA282028 [ AGGGAAGAGATAGAGAGGACACTGTGTCAAAAAAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTATCCTTCCCGTTTTCACCCAAGTTGATG TGATAAATCGAGAAATGCAAACGAACGAAGCATGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGTTTGATCAGACCCAAAAGATGCGTGTATAATAATCGGGTCGTGCGGGGTAGTATGTGGTTTTGTTACGTTTTTTTTTCTCCCCCTCCCCCCGCTTATGTCTCGTTACGTTATTATTTTGATTCGTTTATCATTTCGTTTAGTT] consensusID : consensus_3485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CTGATTGGTCGAATAGTTCTGTTTTACACTTCAGTCTACATCCCCCTCCCTTTGCTTAAGTTGTTGCATTTAGGTGTCGTTGAGATAGAACGTGCAGAGCGCAGATGGGCAGACACGGGAATGGGCAGATTTTTACGTGCATGAATATTAAGGTAATAATATACATCGGACTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCAGGCTCATCACCACGGACAGCCATAATAGTGCGTAAGGGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACC] [+] EMBL BM579157 [CTGATTGGTCGAATAGTTCTGTTTTACACTTCAGTCTACATCCCCCTCCCTTTGCTTAAGTTGTTGCATTTAGGTGTCGTTGAGATAGAACGTGCAGAGCGCAGATGGGCAGACACGGGAATGGGCAGATTTTTACGTGCATGAATATTAAGGTAATAATATACATCGGACTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCAGGCTCATCACCACGGACAGCCATAATAGTGCGTAAGGGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3485#0 ------------------------------------------------------------ consensus_3485#1 CTGATTGGTCGAATAGTTCTGTTTTACACTTCAGTCTACATCCCCCTCCCTTTGCTTAAG 60 consensus_3485#0 ------------------------------------------------------------ consensus_3485#1 TTGTTGCATTTAGGTGTCGTTGAGATAGAACGTGCAGAGCGCAGATGGGCAGACACGGGA 120 consensus_3485#0 --------------------------------------------------GTGTGAATTA 10 consensus_3485#1 ATGGGCAGATTTTTACGTGCATGAATATTAAGGTAATAATATACATCGGACTGTGAATTA 180 ********* consensus_3485#0 AAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCATGCTCATCA 70 consensus_3485#1 AAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCAGGCTCATCA 240 *************************************************** ******** consensus_3485#0 CCACGGACAGCCATAATAGTGCGTAAGAGGGCTGATTTATGTTGATCGCCCGTCAGGGCC 130 consensus_3485#1 CCACGGACAGCCATAATAGTGCGTAAGGGGGCTGATTTATGTTGATCGCCCGTCAGGGCC 300 *************************** ******************************** consensus_3485#0 ACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACCCACACCCATACACAC 190 consensus_3485#1 ACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATAC----------------ACAC 344 **************************************** **** consensus_3485#0 ACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGC 250 consensus_3485#1 ACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGC 404 ************************************************************ consensus_3485#0 CGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTT 310 consensus_3485#1 CGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTT 464 ************************************************************ consensus_3485#0 TTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACCAAAAACAAAAGA 370 consensus_3485#1 TTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACC------------ 512 ************************************************ consensus_3485#0 GAGAAGAAAAGAAAACAAACGCACGATCAGGGAAGAGATAGAGAGGAAACTGTGTCAAAA 430 consensus_3485#1 ------------------------------------------------------------ consensus_3485#0 AAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTA 490 consensus_3485#1 ------------------------------------------------------------ consensus_3485#0 TCCTTCCCGTTTTCACCCAAGTTGATGTTGATAAATCGAGAAATGCAAACGAACGAAGCA 550 consensus_3485#1 ------------------------------------------------------------ consensus_3485#0 TGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGNTTGATCAG 610 consensus_3485#1 ------------------------------------------------------------ consensus_3485#0 ACCCAAAAGATGCGTGTATAATAATCGGGTCGTGCGGGGTAGTATGTGGTTTTGTTACGT 670 consensus_3485#1 ------------------------------------------------------------ consensus_3485#0 TTTTTTTTCTCCCCCTCCCCCCGCTTATGTCTCGTTACGTTATTATTTTGATTCGTTTAT 730 consensus_3485#1 ------------------------------------------------------------ consensus_3485#0 CATTTCGTTTAGTT 744 consensus_3485#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||