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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[GGGCAAACACGCGCGCGCGGNCACATTCATTTGTCAAACCTTACAAAACCGATACGCTTTCACCTATAGTATGCGCAGCAGCGAGCGCGCATCCACTGCTACCGTTTGTAGCAGCAGCAGTAGCAACAGTAAAGCATATTATCATCATTACAAGCGGGGGGAGAGCACGCCGCAGAGCGCGTGCGTGTAACGAAATTGGCACAAAACAAAGTGTGCAGGTGCATTATTAAAACCAAACAATGTCAATATTTCTCCTTTTACTCTTTCCCTTCCTGTGCAGGATACAATCAGGATATTCTCTCCCTTTTCCCAACGCCCCCCCCCCCCTCCAACTGAAGAGGACAAAACACCATACAGTCGCAGAACAACATCATCAATCCCGGCCTAGCCACCATCATCCCCGCCCCAGCCTACACTCTCCTCTGCTCTGCCGTATAATTTTTATTACTCAATTTTGTTAACAAGTTTGTTTTCGCCTGTTCTTGATGGTTTCTTTCACACGCGGGAGGGGGCACCCGACAACAAAGTTATTTCATTTGATAAGTATTTTCTTTTGGTGAATTTTGTTTTTGGTTTGCAATGGTCTTTTTCTCGTTCTTTCTGCCAATGCCCCTTTCTAGTTTTTGCAAACTTA]
[+] EMBL BX626863 [GGGCAAACACGCGCGCGCGGNCACATTCATTTGTCAAACCTTACAAAACCGATACGCTTTCACCTATAGTATGCGCAGCAGCGAGCGCGCATCCACTGCTACCGTTTGTAGCAGCAGCAGTAGCAACAGTAAAGCATATTATCATCATTACAAGCGGGGGGAGAGCACGCCGCAGAGCGCGTGCGTGTAACGAAATTGGCACAAAACAAAGTGTGCAGGTGCATTATTAAAACCAAACAATGTCAATATTTCTCCTTTTACTCTTTCCCTTCCTGTGCAGGATACAATCAGGATATTCTCTCCCTTTTCCCAACGCCCCCCCCCCCCTCCAACTGAAGAGGACAAAACACCATACAGTCGCAGAACAACATCATCAATCCCGGCCTAGCCACCATCATCCCCGCCCCAGCCTACACTCTCCTCTGCTCTGCCGTATAATTTTTATTACTCAATTTTGTTAACAAGTTTGTTTTCGCCTGTTCTTGATGGTTTCTTTCACACGCGGGAGGGGGCACCCGACAACAAAGTTATTTCATTTGATAAGTATTTTCTTTTGGTGAATTTTGTTTTTGGTTTGCAATGGTCTTTTTCTCGTTCTTTCTGCCAATGCCCCTTTCTAGTTTTTGCAAACTTA]
consensusID : consensus_3501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence
[ATTCGCAAGCTGCGCAATTGCGGCAGAGGCGGGCAAACACGCGCGCGCGGTCACATTCATTTGTCAAACCTTACAAAACCGATACGCTTTCACCTATAGTATGCGCAGCAGCGAGCGCGCATCCACTGCTACCGTTTGTAGCAGCAGCAGTAGCAACAGTAAAGCATATTATCATCATTACAAGCGGGGGGAGAGCACGCCGCAGAGCGCGTGCGTGTAACGAAATTGGCACAAAACAAACGGTGTTAAATTAGGAGTTTTTTTATGATTAGAAATGCAGGCTAAGGATAGTAATTTTAAGGCAATTAGTGTTTTTTTTTTCTTCGAATTAGCATTACTTTAAACGAATCCTTATCACCAAGCGAGTGCGTATGTG-TGTGTGTGCGCATACATAATCGCTCCACAATTTTAAAGCACTCCTCCCCGGTGGGGGGTAGCAGCATATGCAAATATGCGCGCCGAAAGGCTCTTTTTTAAGTTTGCAAACAAAGTGTGCAGGTGCATTATTAAAACCAAACAATGTCAATATTTCTCCTTTTACTCTTTCCCTTCCTGTGCAGGATACAATCAGGATATTCTCTCCCTTAACCCAACGCCCCCCCCCCCCCC]
[-] EMBL BM615456 [ATTCGCAAGCTGCGCAATTGCGGCAGAGGCGGGCAAACACGCGCGCGCGGTCACATTCATTTGTCAAACCTTACAAAACCGATACGCTTTCACCTATAGTATGCGCAGCAGCGAGCGCGCATCCACTGCTACCGTTTGTAGCAGCAGCAGTAGCAACAGTAAAGCATATTATCATCATTACAAGCGGGGGGAGAGCACGCCGCAGAGCGCGTGCGTGTAACGAAATTGGCACAAAACAAACGGTGTTAAATTAGGAGTTTTTTTATGATTAGAAATGCAGGCTAAGGATAGTAATTTTAAGGCAATTAGTGTTTTTTTTTTCTTCGAATTAGCATTACTTTAAACGAATCCTTATCACCAAGCGAGTGCGTATGTG TGTGTGTGCGCATACATAATCGCTCCACAATTTTAAAGCACTCCTCCCCGGTGGGGGGTAGCAGCATATGCAAATATGCGCGCCGAAAGGCTCTTTTTTAAGTTTGCAAACAAAGTGTGCAGGTGCATTATTAAAACCAAACAATGTCA ]
[+] EMBL CNS09FL1 [ aGTGTTTTTTTTCTTCGAATTAGCATTACTTTAAACGAATCCTTATCACCAAGCGCGTGCGTATGTGCTGTGTGTGCGCATACATAACCGCTCCACAATTTTAAAGCACTCCTCCCCGGTGGGGGGTAGCAGCATATGCAAATATGCGCGACGAAAGGCTCTTTTTTAAGTTTGCAAACAAAGTGTGCAGGTGCATTATTAAAACCAAACAATGTCAATATTTCTCCTTTTACTCTTTCCCTTCCTGTGCAGGATACAATCAGGATATTCTCTCCCTTAACCCAACGCCCCCCCCCCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3501#0 ------------------------------GGGCAAACACGCGCGCGCGGNCACATTCAT 30
consensus_3501#1 ATTCGCAAGCTGCGCAATTGCGGCAGAGGCGGGCAAACACGCGCGCGCGGTCACATTCAT 60
******************** *********
consensus_3501#0 TTGTCAAACCTTACAAAACCGATACGCTTTCACCTATAGTATGCGCAGCAGCGAGCGCGC 90
consensus_3501#1 TTGTCAAACCTTACAAAACCGATACGCTTTCACCTATAGTATGCGCAGCAGCGAGCGCGC 120
************************************************************
consensus_3501#0 ATCCACTGCTACCGTTTGTAGCAGCAGCAGTAGCAACAGTAAAGCATATTATCATCATTA 150
consensus_3501#1 ATCCACTGCTACCGTTTGTAGCAGCAGCAGTAGCAACAGTAAAGCATATTATCATCATTA 180
************************************************************
consensus_3501#0 CAAGCGGGGGGAGAGCACGCCGCAGAGCGCGTGCGTGTAACGAAATTGGCACAAAACAAA 210
consensus_3501#1 CAAGCGGGGGGAGAGCACGCCGCAGAGCGCGTGCGTGTAACGAAATTGGCACAAAACAAA 240
************************************************************
consensus_3501#0 GTGTGCAGGTGCATTATTAAAACCAAACAATGTCAATATTTCTCCTTTTACTCTTTCCCT 270
consensus_3501#1 CGGTG-----------TTAAATTAGGAGTTTTTTTATGATTAGAAATGCAGGCTAAGGAT 289
*** ***** * * * ** ** * * ** *
consensus_3501#0 TCCTGTGCAGGATACAATCAGGATATTCTCTCCCTTTTCCCAACGCCCCCCCCCCCCTCC 330
consensus_3501#1 AGTAAT-TTTAAGGCAATTAGTGTTTTTTTTTTCTT-------CGAATTAGCATTACTTT 341
* * **** ** * ** * * *** ** * **
consensus_3501#0 AACTGAAGAGGACAAAACACCATACAGTCGCAGAACAACATCATCAATCCCGGCCTAGCC 390
consensus_3501#1 AA---ACGAATCCTTATCACCAAGCGAGTGCGTA-------TGTGTGTGTGTGCGCATAC 391
** * ** * * ***** * ** * * * ** * *
consensus_3501#0 ACCATCATCCCCGCCCCAGCCTACACTCTCCTCTGCTCTGCCGTATAATTTTTATTACTC 450
consensus_3501#1 ATAATCGCTCCACAATTTTAAAGCACTCCTCCCCGGTGGGGGGTAGCAGCATATGCAAAT 451
* *** ** ***** * * * * * *** * * *
consensus_3501#0 AATTTTGTTAACAAGTTTGTTTTCGCCTGTTCTTGATGGTTTCTTTCACACGCGGGAGGG 510
consensus_3501#1 ATGCGCGCCGAAAGGCTCTTTTTTA--AGTTTGCAAACAAAGTGTGCAGGTGCATTATTA 509
* * * * * * **** *** * * ** ** *
consensus_3501#0 GGCACCCGACAACAAAGTTATTTCATTTGATAAGTATTTTCTTTTGGTGAATTTTGTTTT 570
consensus_3501#1 AA-ACCAAACAATGTCAATATTTCTCCTTTTACTCTTTCCCTTCCTGTGCA--------- 559
*** **** ****** * ** ** *** *** *
consensus_3501#0 TGGTTTGCAATGGTCTTTTTCTCGTTCTTTCTGCCAATGCCCCTTTCTAGTTTTTGCAAA 630
consensus_3501#1 --GGATACAATCAGGATATTCTC-TCCCTTAACCCAACGCCCCCCCCCCCCCC------- 609
* * **** * ***** * * ** **** ***** *
consensus_3501#0 CTTA 634
consensus_3501#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||