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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence
[ATCNGGCACGAGGGGCTGCGGCTTCTCCACGCACACGGGCAGCGAAATGTCGAGAAAGTACTCATGCTGCGACGAGGTATGGTGGCAATCCTGGCAGGTGAGGGTCGACACGAGCGAGCCGCGGAACACCTGCTCCGGCCGGAACACCCACTGCGAGATCTGCTCGTTGTAGTACTTGGCCAGCGCGCGCTGCGTGCCGTCCGTGTTCTGCCGACTCTTGCGCGACTCCAGCCCGAGCTTTTGCAGTATCAGCGACTGGTAGCGCCGCAGATCGTCCGTGCGCACGCTCTCGAGCAGGTGCCGCAGCAGCTCGTGCGAGTCGTGCTGGTCTGCCCCCGTCAAACTGGGGCCACTTGCTGGTCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGGACTGNTTCAGAAATGTCGGACAGGGTAGGGTGTGCGGGGCGAGACACTGCTAGGGACCGCGTTTGAAGAAGCACGTGTTGCCGAGATTTGGACAGGGCCGGCACACGCGGGCAGCGCGGTCGATAAGGCTTTGGTCGGCGTGCGGGCACGAGGCTTGAGGACCGAATCTGGCCGGTCNGGCCGGCCTCGGGCCCCTTTCGGCGGCGCTCTTGGTTCGGNACGTTNATCGGCTNGAGTTAAA]
[+] EMBL BX467605 [ATCNGGCACGAGGGGCTGCGGCTTCTCCACGCACACGGGCAGCGAAATGTCGAGAAAGTACTCATGCTGCGACGAGGTATGGTGGCAATCCTGGCAGGTGAGGGTCGACACGAGCGAGCCGCGGAACACCTGCTCCGGCCGGAACACCCACTGCGAGATCTGCTCGTTGTAGTACTTGGCCAGCGCGCGCTGCGTGCCGTCCGTGTTCTGCCGACTCTTGCGCGACTCCAGCCCGAGCTTTTGCAGTATCAGCGACTGGTAGCGCCGCAGATCGTCCGTGCGCACGCTCTCGAGCAGGTGCCGCAGCAGCTCGTGCGAGTCGTGCTGGTCTGCCCCCGTCAAACTGGGGCCACTTGCTGGTCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGGACTGNTTCAGAAATGTCGGACAGGGTAGGGTGTGCGGGGCGAGACACTGCTAGGGACCGCGTTTGAAGAAGCACGTGTTGCCGAGATTTGGACAGGGCCGGCACACGCGGGCAGCGCGGTCGATAAGGCTTTGGTCGGCGTGCGGGCACGAGGCTTGAGGACCGAATCTGGCCGGTCNGGCCGGCCTCGGGCCCCTTTCGGCGGCGCTCTTGGTTCGGNACGTTNATCGGCTNGAGTTAAA]
[-] EMBL AGA285255 [ GCTCTCGAGCAGGTGCCGCAGCAGCTCGTGCGAGTCGTGCTGGTC GCCCCCGTCAAACTGGGGCCACTTGCTGGTCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGC GCCAGTATCTCCGT ]
consensusID : consensus_3510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[CGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGACTGCTTCAGAATGTCGGACAGGTAGGGTGTGCGGGCGAGACACTGCAGGACCGCGTTGAAGAAGCACGTGTTGCCGAGATTGGACAGGCCGCGCACACGCGGCAGCGCGTCGATGAGGCTTTTGGTCGCGTGCGGCACGAGGCTGGAGGACGATGCGGCCGGTCCGGCCGCCTCGGGCCCCTTGCCGCGCGCGCTCTGCTCGTACGTTTGATCGCTGGAGTTAAACTTGGC]
[-] EMBL AGA282635 [CGGGCGCGTTCGCCTGCAGGTCGGTCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCGGGGGCGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACCTTTTCGCCCTCGGTCGCCGACTGCTTCAGAATGTCGGACAGGTAGGGTGTGCGGGCGAGACACTGCAGGACCGCGTTGAAGAAGCACGTGTTGCCGAGATTGGACAGGCCGCGCACACGCGGCAGCGCGTCGATGAGGCTTTTGGTCGCGTGCGGCACGAGGCTGGAGGACGATGCGGCCGGTCCGGCCGCCTCGGGCCCCTTGCCGCGCGCGCTCTGCTCGTACGTTTGATCGCTGGAGTTAAACTTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3510#0 ATCNGGCACGAGGGGCTGCGGCTTCTCCACGCACACGGGCAGCGAAATGTCGAGAAAGTA 60
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CTCATGCTGCGACGAGGTATGGTGGCAATCCTGGCAGGTGAGGGTCGACACGAGCGAGCC 120
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 GCGGAACACCTGCTCCGGCCGGAACACCCACTGCGAGATCTGCTCGTTGTAGTACTTGGC 180
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CAGCGCGCGCTGCGTGCCGTCCGTGTTCTGCCGACTCTTGCGCGACTCCAGCCCGAGCTT 240
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TTGCAGTATCAGCGACTGGTAGCGCCGCAGATCGTCCGTGCGCACGCTCTCGAGCAGGTG 300
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CCGCAGCAGCTCGTGCGAGTCGTGCTGGTCTGCCCCCGTCAAACTGGGGCCACTTGCTGG 360
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TCAGCTCCTGCAGCAGCCGGTTCGGGGAGAGCGTTTCGGGCGCGTTCGCCTGCAGGTCGG 420
consensus_3510#1 ------------------------------------CGGGCGCGTTCGCCTGCAGGTCGG 24
************************
consensus_3510#0 TCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCG 480
consensus_3510#1 TCAGCAGCTCGGTAAGCGCCTCGGTGAGGCTGCGCCAGTTGTCCAGCACGCCGTCGATCG 84
************************************************************
consensus_3510#0 GGGGCGGCCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACC 540
consensus_3510#1 GGGGCG-CCAGTATCTCCGTCCCGTCCGGCAGCTTGATCGTCCCGCCCGGTATGTGCACC 143
****** *****************************************************
consensus_3510#0 TTTTCGCCCTCGGTCGCCGGACTGNTTCAGAAATGTCGGACAGGGTAGGGTGTGCGGGGC 600
consensus_3510#1 TTTTCGCCCTCGGTCGCCG-ACTGCTTCAGAA-TGTCGGACAGG-TAGGGTGTGCGGG-C 199
******************* **** ******* *********** ************* *
consensus_3510#0 GAGACACTGCTAGGGACCGCGTTTGAAGAAGCACGTGTTGCCGAGATTTGGACAGGGCCG 660
consensus_3510#1 GAGACACTGC--AGGACCGCGTT-GAAGAAGCACGTGTTGCCGAGATT-GGACAGGCCGC 255
********** ********** ************************ ******* *
consensus_3510#0 GCACACGCGGGCAGCGCGGTCGATAAGGCTTTGGTCGGCGTGCGGGCACGAGGCTTGAGG 720
consensus_3510#1 GCACACGCGG-CAGCGCG-TCGATGAGGCTTTTGGTCGCGTGCGG-CACGAGGCTGGAGG 312
********** ******* ***** ******* * ******** ********* ****
consensus_3510#0 ACCGAATCTGGCCGGTCNGGCCGGCCTCGGGCCCCTTTCGGCGGCGCTCTTGGTTCGGNA 780
consensus_3510#1 AC--GATGCGGCCGGTCCGGCCG-CCTCGGGCCCCTTGCCGCG-CGCGCTCTGCTCG-TA 367
** ** ******** ***** ************* * *** *** ** * *** *
consensus_3510#0 CGTTNATCGGCTNGAGTTAAA------ 801
consensus_3510#1 CGTTTGATCGCTGGAGTTAAACTTGGC 394
**** *** ********
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||