These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1088 fasta sequence [CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCCTAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCATCCAATCACAACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGCTAGAGTAGCGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCAACTTAACAGTCGCCCAGGATACGCTTCACCATGCCAAGAATATTTCATTTCCCACTGCAGGGAGTAGGAAAAGGAAATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCGAGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAACCTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTATGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGCGATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAACGTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATACGCTGGTGAACTTCTAGATGCACT] [+] EMBL BM581554 [CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCCTAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACA ] [+] EMBL BM635839 [ ccGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTATAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCATCCAATCACAACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGCTAGAGTAGCGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCAACTTAACAGTCGCCCAGGATACGCTTCACCATGCCAAGAATATTTCATTTCCCACTGCAGGGAGTAGGAAAAGGAAATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCGAGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAACCTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTATGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGCGATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAACGTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATACGCTGGTGAACTTCTAGATGCACT] consensusID : consensus_3517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCATCCAATCACCCTAGCATACAACGAGATTCATTCAAACAAGACTCAATCACGTGGCGCTAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTAACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGAAGGGAGTAGGAAAAGGGGAATGAAATCATACTAT] [+] EMBL BM637022 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCATCCAATCACCCTAGCATACAACGAGATTCATTCAAACAAGACTCAATCACGTGGCGCTAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTAACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGAAGGGAGTAGGAAAAGGGGAATGAAATCATACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3517#0 CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCC 60 consensus_3517#1 ------------------------------------------------------------ consensus_3517#0 TAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGC 120 consensus_3517#1 ------CCGCCCACGCGTCCGCCCACGC-GTCCGGTTGACACGCATTAGCAAAACTGTGC 53 ** * * *** ** * * ************************** consensus_3517#0 ATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGA 180 consensus_3517#1 ATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGA 113 ************************************************************ consensus_3517#0 GCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCG 240 consensus_3517#1 GCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCG 173 ************************************************************ consensus_3517#0 CGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTA 300 consensus_3517#1 CGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTA 233 ************************************************************ consensus_3517#0 AATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCA 360 consensus_3517#1 AATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCA 293 ************************************************************ consensus_3517#0 CTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATC 420 consensus_3517#1 CTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATC 353 ************************************************************ consensus_3517#0 ATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAG 480 consensus_3517#1 ATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAG 413 ************************************************************ consensus_3517#0 TGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCAT 540 consensus_3517#1 TGTGTG--TAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCAT 471 ****** *********** ************************* ************** consensus_3517#0 CCAATCAC----------AACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGC 590 consensus_3517#1 CCAATCACCCTAGCATACAACGAGATTCATT----CAAACAAGACTCAATCACGTGGCGC 527 ******** ************* ************************* consensus_3517#0 TAGAGTAG--CGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCA 648 consensus_3517#1 TAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTA 587 ******** ***** ****** ********* ********** ************** * consensus_3517#0 ACTTAACAGTCGCCCAGGATACGCTTCACCATG-CCAAGAATATTTCATTTCCCACTGCA 707 consensus_3517#1 ACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGA 647 ***************** * ***** ******* *** * * **************** * consensus_3517#0 -GGGAGTAGGAAAAGGA-AATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCG 765 consensus_3517#1 AGGGAGTAGGAAAAGGGGAATGAAATCATACTAT-------------------------- 681 *************** **************** consensus_3517#0 AGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAAC 825 consensus_3517#1 ------------------------------------------------------------ consensus_3517#0 CTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTA 885 consensus_3517#1 ------------------------------------------------------------ consensus_3517#0 TGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGC 945 consensus_3517#1 ------------------------------------------------------------ consensus_3517#0 GATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAAC 1005 consensus_3517#1 ------------------------------------------------------------ consensus_3517#0 GTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATAC 1065 consensus_3517#1 ------------------------------------------------------------ consensus_3517#0 GCTGGTGAACTTCTAGATGCACT 1088 consensus_3517#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||