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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1285 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCACGGAAGACATTCAGGCGTACGTGAAGGAGATGACGAAGGAGCTGGCCACCGAGATCAAGTCCGAGATACGGGAGGTCATTAGCAAGGTGGAGGATGTGCTCGAAAGCACCGACAGCATCGAGATGAGCAGCTTGGTCAACTTCAACTCCCTCGGACCGCAGAGCCATCCTGCACCGGCGGACAGCAAGCGCGATTCCATCTGCACCAGCGACGTGGTGGACTATCTGCGCGAGTTCAGCAAGGAGATGACGAACGAGGTGAAGTCCGAGATACGGGACGTCGTGAATGCGGTCGATGGGATTATCTCGCCCGAAGGATTTCTCGGTGCGCGCAAAAACTCACCCCCGGACATAGTGCGCAGCAGCAACGGTAGCGCAGCAGCAGCAGCAGGTGGAACGTCCAACGCAGCCAGTGTCTGCGGAGCGGCACCACACAAACTCTTGATCAAACAACGGTACAGCGATATTACGCCGGACGCCAAACTCCATCGGCCCCGGTCGGCCGACCACGACAACAGCAAGCACCGGTCGGAATCGTTCCCGCGGCCCAGTTCGGCCGCCAGCCCGGACTACATGATGGGACCGTTGCACGGTGTGGCCGGACCGATCGCCGCCTGCAAGAGTTTCGATCCACGGTCCACCATGTCGTCGCAGGACTCCGGCATCAATATGAACTTTTGCGACGCGCCGGACGATAGTGCCGGGTGCCGGGTACGGGCGACGGGCCGGACGGTTGGCCACGACAGTAGAATACGCACCGTCTCCGCCGATGTGGACAACACAACTCACAAGCCAGCAATTCCACCGCGACGGCTCATATCGGAACCGTCCGGTGGATCGATCGTTGAAACCTCTCCCAATACAGACACGGCCAGTCCAAACGATCGACATCCGCCCGGTCCGGCCGATGCTACTACCGGCAAAAGTCCCCTAACCCGCCAGCAGCACGTCCTCAACCGTACACCTTCGGGGGAGACCGTCGTCGGGACGTGACGCCTGGGACGACCGGTGGCGTCCAGTGGCACCAGATGCCGAAGGAAGTCTGGAAGCAGGCAGCCGAGGCATTGGACGAGTATCGAATGCTGCAGGAGGGCGATCGCGTCCTGGTGTGCCTGTCGGGCAGTAGCTCCACCCTCTGCCTGCTGCATCTGTTGCGTCAGTTTTGTCAAACCCGCCGGCTGAANGTGCAGCTGGCCGCCGTCACCGTTGGCAGCGCGGACAGCGGAGTGGATCCGCGCGCGCTAATGNTGTACCTG]
[+] EMBL BM615183 [CCGCCCACGCGTCCGCCCACGCGTCCGGCACGGAAGACATTCAGGCGTACGTGAAGGAGATGACGAAGGAGCTGGCCACCGAGATCAAGTCCGAGATACGGGAGGTCATTAGCAAGGTGGAGGATGTGCTCGAAAGCACCGACAGCATCGAGATGAGCAGCTTGGTCAACTTCAACTCCCTCGGACCGCAGAGCCATCCTGCACCGGCGGACAGCAAGCGCGATTCCATCTGCACCAGCGACGTGGTGGACTATCTGCGCGAGTTCAGCAAGGAGATGACGAACGAGGTGAAGTCCGAGATACGGGACGTCGTGAATGCGGTCGATGGGATTATCTCGCCCGAAGGATTTCTCGGTGCGCGCAAAAACTCACCCCCGGACATAGTGCGCAGCAGCAACGGTAGCGCAGCAGCAGCAGCAGGTGGAACGTCCAACGCAGCCAGTGTCTGCGGAGCGGCACCACACAAACTCTTGATCAAACAACGGTACAGCGATATTACGCCGGACGCCAAACTCCATCGGCCCCGGTCGGCCGACCACGACAACAGCAAGCACCGGTCGGAATCGTTCCCGCGGCCCAGTTCGGCCGCCAGCCCGGACTACATGATGGGACCGTTGCACGGTGTGGCCGGACCGATCGCCGCCTGCAAGAGTTTCGATCCACGGTCCACCATGTCGTCGCAGGACTCCGGCATCAATATGAACTTTTGCGACGCG ]
[+] EMBL BX623422 [ CCGGTCGGAATCGTTCCCGCGGCCCAGTTCGGCCGCCAGCCCGGACTACATGATGGGACCGTTGCACGGTGCGGCCGGACCGATCGCCGCCTGCAAGAGTTTCGATCCACGGTCCACCATGTCGTCGCAGGACTCCGGCATCAATATGAACTTTTGCGACGCGCCGGACGATAGTGCCGGGTGCCGGGTACGGGCGACGGGCCGGACGGTTGGCCACGACAGTAGAATACGCACCGTCTCCGCCGATGTGGACAACACAACTCACAAGCCAGCAATTCCACCGCGACGGCTCATATCGGAACCGTCCGGTGGATCGATCGTTGAAACCTCTCCCAATACAGACACGGCCAGTCCAAACGATCGACATCCGCCCGGTCCGGCCGATGCTACTACCGGCAAAAGTCCCCTAACCCGCCAGCAGCACGTCCTCAACCGTACACCTTCGGGGGAGACCGTCGTCGGGACGTGACGCCTGGGACGACCGGTGGCGTCCAGTGGCACCAGATGCCGAAGGAAGTCTGGAAGCAGGCAGCCGAGGCATTGGACGAGTATCGAATGCTGCAGGAGGGCGATCGCGTCCTGGTGTGCCTGTCGGGCAGTAGCTCCACCCTCTGCCTGCTGCATCTGTTGCGTCAGTTTTGTCAAACCCGCCGGCTGAANGTGCAGCTGGCCGCCGTCACCGTTGGCAGCGCGGACAGCGGAGTGGATCCGCGCGCGCTAATGNTGTACCTG]
consensusID : consensus_3518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[CGCCCGGTCCGGCCGATGCTACTACGGGCAAAAGTCCCCTAACCCGCCAGCAGCACGTCCTCAACCGTACACCTTCGGGGGAGACCGTCGTCGGGCACGTGACGGCTGGGTCGACCGGTGGCGTCCAGTGGCACCAGATGCCGAAGGAAGTCTGGAAGCAGGCAGCCGAGCTGTTCGTGAAGTTCACCGAGTTGTTTAAAATATAAAAAAAAGATGAAGAACGCCTCCTGAGATGAGATGAACAGTAGCGGCGGGAGATGCTTTGCAGAGTGCGAGTGAGAGCGAGAGAGAGAGAGAGGAAGAAAAGGACACATGTGTGTAACTTTCGTGTGCGTTTTGAAGGGGGGAGAGTGTCCCAAACAAGCGTTTAATGAAAGGAGCTGTGGAGCGGAACTTTAATGCATATCTGTACCATTATTTTAAAGTCGCTGCTGGAGGAGAGATGAGATCCGGAAAGAAGATTTTGTAGCTGCTTTTTTTTCTGCGTGCGCAATACGCGAAACATCCTTACC]
[+] EMBL BX604187 [CGCCCGGTCCGGCCGATGCTACTACGGGCAAAAGTCCCCTAACCCGCCAGCAGCACGTCCTCAACCGTACACCTTCGGGGGAGACCGTCGTCGGGCACGTGACGGCTGGGTCGACCGGTGGCGTCCAGTGGCACCAGATGCCGAAGGAAGTCTGGAAGCAGGCAGCCGAGCTGTTCGTGAAGTTCACCGAGTTGTTTAAAATATAAAAAAAAGATGAAGAACGCCTCCTGAGATGAGATGAACAGTAGCGGCGGGAGATGCTTTGCAGAGTGCGAGTGAGAGCGAGAGAGAGAGAGAGGAAGAAAAGGACACATGTGTGTAACTTTCGTGTGCGTTTTGAAGGGGGGAGAGTGTCCCAAACAAGCGTTTAATGAAAGGAGCTGTGGAGCGGAACTTTAATGCATATCTGTACCATTATTTTAAAGTCGCTGCTGGAGGAGAGATGAGATCCGGAAAGAAGATTTTGTAGCTGCTTTTTTTTCTGCGTGCGCAATACGCGAAACATCCTTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3518#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCACGGAAGACATTCAGGCGTACGTGAAGGAGA 60
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 TGACGAAGGAGCTGGCCACCGAGATCAAGTCCGAGATACGGGAGGTCATTAGCAAGGTGG 120
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 AGGATGTGCTCGAAAGCACCGACAGCATCGAGATGAGCAGCTTGGTCAACTTCAACTCCC 180
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 TCGGACCGCAGAGCCATCCTGCACCGGCGGACAGCAAGCGCGATTCCATCTGCACCAGCG 240
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 ACGTGGTGGACTATCTGCGCGAGTTCAGCAAGGAGATGACGAACGAGGTGAAGTCCGAGA 300
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 TACGGGACGTCGTGAATGCGGTCGATGGGATTATCTCGCCCGAAGGATTTCTCGGTGCGC 360
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 GCAAAAACTCACCCCCGGACATAGTGCGCAGCAGCAACGGTAGCGCAGCAGCAGCAGCAG 420
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 GTGGAACGTCCAACGCAGCCAGTGTCTGCGGAGCGGCACCACACAAACTCTTGATCAAAC 480
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 AACGGTACAGCGATATTACGCCGGACGCCAAACTCCATCGGCCCCGGTCGGCCGACCACG 540
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 ACAACAGCAAGCACCGGTCGGAATCGTTCCCGCGGCCCAGTTCGGCCGCCAGCCCGGACT 600
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 ACATGATGGGACCGTTGCACGGTGTGGCCGGACCGATCGCCGCCTGCAAGAGTTTCGATC 660
consensus_3518#1 ------------------------CGCCCGGTCCGGCCGATGCT-------ACTACGGGC 29
* **** *** ** ** * ** *
consensus_3518#0 CACGGTCCACCATGTCGTC-GCAGGACTCCGGCATCAATATGAACTTTTGCGACGCGCCG 719
consensus_3518#1 AAAAGTCCCCTAACCCGCCAGCAGCACGTCCTCAACCGTAC--ACCTTCGGG-------G 80
* **** * * ** * **** ** * ** * ** ** ** * * *
consensus_3518#0 GACGATAGTGCCGGGTGCCGGGTACGGGCGACGGGCCGGACGGTTGGCCACGACAGTAGA 779
consensus_3518#1 GAGACCGTCGTCGGGCAC--GTGACGGCTGGGTCGACCGGTGGCGTCCAGTGGCACCAGA 138
** * **** * * **** * * * * ** * * ** ***
consensus_3518#0 ATACGCACCGTCTCCGCCGATGTGGACAACACAACTCACAAGCCAGCAATTCCACCGCGA 839
consensus_3518#1 TGCCGAAGGAAGTCTG--GAAGCAGGCAGCCGAGCT----GTTCGTGAAGTTCACCGAGT 192
** * ** * ** * * ** * * ** * ** * ***** *
consensus_3518#0 CGGCTCATATCGGAACCGTCCGGTGGATCGATCGTTGAAACCTCTCCCAATACAGACACG 899
consensus_3518#1 TGTTTAAAATATAAAA-----AAAAGATGAA------GAACGCCTCCTGAGAT-GAGATG 240
* * * ** ** *** * *** **** * * ** * *
consensus_3518#0 GCCAGTCCAAACGATCGACATCCGCCCGGTCCGGCCGATGCTACTACCGGCAAAAGTCCC 959
consensus_3518#1 AACAGTAGCGGCGGGAGATGCTTTGCAGA--------GTGCGAGTGAGAGCGAGAGAGAG 292
**** ** ** * * *** * * ** * **
consensus_3518#0 CTAACCCGCCAGCAGCACGTCCTCAACCGTACACCTTCGGGGGAGACCGTCGTCGGGACG 1019
consensus_3518#1 AGAGAGGAAGAAAAGGACA----CATGTGTGTAACTTTCGTGTGCGTTTTGAAGGGGGGA 348
* * ** ** ** ** * *** * * * ***
consensus_3518#0 TGACGCCTGGGACGACCGGTGGCGTCCAGTGGCACCAGATGCCGAAGGAAGTCTGGAAGC 1079
consensus_3518#1 GAGTGTCCCAAACAA------GCGTTTAATGAAAGGAGCTGTGGAGCGGAACTTTAATGC 402
* * ** * **** * ** * ** ** ** * * * * **
consensus_3518#0 AGGCAGCCGAGGCATTGGACGAGTATCGAATGCTGCAGGAGGGCGATCGCGTCCTGGTGT 1139
consensus_3518#1 A--TATCTGTACCATTATTTTAAAGTCG----CTGCTGGAGGAGAGATGAGATCCGGAAA 456
* * * * **** * *** **** ***** * * * **
consensus_3518#0 GCCTGTCGGGCAGTAGCTCCACCCTCTGCCTGCTGCATCTGTTGCGTCAGTTTTGTCAAA 1199
consensus_3518#1 GAAGATTTTGTAGCTGCTTTTTTTTCTGCGTGC-GCAATACGCGAAACATCCTTACC--- 512
* * * ** *** ***** *** *** * ** ** *
consensus_3518#0 CCCGCCGGCTGAANGTGCAGCTGGCCGCCGTCACCGTTGGCAGCGCGGACAGCGGAGTGG 1259
consensus_3518#1 ------------------------------------------------------------
consensus_3518#0 ATCCGCGCGCGCTAATGNTGTACCTG 1285
consensus_3518#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||