These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [GAGTTAGGTCCAATATTAGTACACAACTGAACGCACTAACATGAGTGTGTCGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATCTGCTGCTGCTGCTGCGGCTACTACCGTTTCTGATCTCGCAGGTAAACGCGGAAAACCGGCCCCTATTCATTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCACACACACACACGGACGCAGGTGAAACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTCACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGACGCAGTGCGAGAGCGATTTGTATGTACGTTTGATGATATTATGATTGAGTGGAAACAAGCGAGCGAAAGAGGGTTGCACAATCTGAATGACAAATAATTAAATGCAAA] [+] EMBL BX614742 [GAGTTAGGTCCAATATTAGTACACAACTGAACGCACTAACATGAGTGTGTCGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATCTGCTGCTGCTGCTGCGGCTACTACCGTTTCTGATCTCGCAGGTAAACGCGGAAAACCGGCCCCTATTCATTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCACACACACACACGGACGCAGGTGAAACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTCACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGACGCAGTGCGAGAGCGATTTGTATGTACGTTTGATGATATTATGATTGAGTGGAAACAAGCGAGCGAAAGAGGGTTGCACAATCTGAATGACAAATAATTAAATGCAAA] consensusID : consensus_3526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGGTGAACTTCCGAAAACGAAAACGAGTGAAGTGCTATCGGGCTTATATTTCTCCATTCAGGATCATTTCCTGTAGCAACACGAATTCGTCCTATTTTCGTCTTGCGGCGTCTGTTTGTTCCCGAAAAAAGCATCCTAGCGGAGGAAAAGCATCTGCTACGGTGTGATCAAAGGAGTGTGTGTGTGTGTGTGAGTGTGAGTGTGACGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATTTGCTGCTGCTGCTGCTGCGGCTGCTACCGTTTCTGATCTCGCAGGCAAACGCGGAAAACCGGCCCCTATTCGGTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCAACAACACCGGCACGTAATCTTAATATAAATCTGCCAGAAAACGTGACCCAAGGTCCGCGAGGGCCACGGGCACCC] [+] EMBL BM621085 [CCGGTGAACTTCCGAAAACGAAAACGAGTGAAGTGCTATCGGGCTTATATTTCTCCATTCAGGATCATTTCCTGTAGCAACACGAATTCGTCCTATTTTCGTCTTGCGGCGTCTGTTTGTTCCCGAAAAAAGCATCCTAGCGGAGGAAAAGCATCTGCTACGGTGTGATCAAAGGAGTGTGTGTGTGTGTGTGAGTGTGAGTGTGACGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATTTGCTGCTGCTGCTGCTGCGGCTGCTACCGTTTCTGATCTCGCAGGCAAACGCGGAAAACCGGCCCCTATTCGGTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCAACAACACCGGCACGTAATCTTAATATAAATCTGCCAGAAAACGTGACCCAAGGTCCGCGAGGGCCACGGGCACCC] consensusID : consensus_3526#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [AACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTKACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGAAGCAGTGCGAGAGCGATTTGTATGTACCCTTCGTGCCGAAT] [-] EMBL AGA283083 [AACAGCAGTGTACTATCAGTAGACCGAGCACATTGGTAAGCTKACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAGCGCGTTCAGAGCGTGTGCCCGCCGTTAGTGCGAAGCAGTGCGAGAGCGATTTGTATGTACCCTTCGTGCCGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3526#0 GAGTTAGGTCCAATATTAGTACACAACTGAACGCACTAACATGAGTGTGTCGCAAAAGAA 60 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 ------------------------------------------------------------ consensus_3526#0 TGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGTAGTGCGTTGATGCAGAA 120 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 ------------------------------------------------------------ consensus_3526#0 AGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAACCGATCTGCTGCTGCTG 180 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 -----------------------------------------CCGGTGAACTTCCGAAAAC 19 consensus_3526#0 CTGCGGCTACTACCGTTTCTGATCTCGCAGGTAAACGCGGAAAACCGGCCCCTATTCATT 240 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 GAAAACGAGTGAAGTGCTATCGGGCTTATATTTCTCCATTCAGGATCATTTCCTGTAGCA 79 consensus_3526#0 GTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCCTGAAGGATGCCTGGAGTGGTA 300 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 ACACGAATTCGTCCTATTTTCGTCTTGCGGCGTCTGTTTGTTCCCGAAAAAAGCATCCTA 139 consensus_3526#0 TTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGACGTTAATTAACGGCATAAACTAT 360 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 GCGGAGGAAAAGCATCTGCTACGGTGTGATCAAAGGAGTGTGTGTGTGTGTGTGAGTGTG 199 consensus_3526#0 GCATCTAATAATGAACAGTTACCGCCACCGGAATCGACCCCCCAACAACACTCACACACA 420 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 AGTGTGACGCAAAAGAATGTGTTCCAGTGTACGCGTGTACTAACAGCAAACAGTGCCTGT 259 consensus_3526#0 CACACGGACGCAGGTGAAAC-AGCAGTGTACTATCAGTAGACCGAGC--ACATTGGTAAG 477 consensus_3526#2 -----------------AAC-AGCAGTGTACTATCAGTAGACCGAGC--ACATTGGTAAG 40 consensus_3526#1 AGTGCGTTGATGCAGAAAGCGAGCGGATTATAATCACACAACCGAACCTGCTTCACACAA 319 * * *** * ** **** ***** * * * * consensus_3526#0 CTCACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAG-CGCGTTCA 536 consensus_3526#2 CTKACCGGCAGATCCTGGGCCGATGATTGCACCGAGCTTTGCATTTTACAG-CGCGTTCA 99 consensus_3526#1 CCGATTTGCTGCTGCTGCTGCTGCGGCTGCTACCGTTTCTG-ATCTCGCAGGCAAACGCG 378 * * ** * * *** * * *** * * ** ** * *** * * consensus_3526#0 GAGCGTGTGCCCGCCGTTAGTGCGA-CGCAGTGCGAGAGCGATTTGTATGTACG-TTTGA 594 consensus_3526#2 GAGCGTGTGCCCGCCGTTAGTGCGA-AGCAGTGCGAGAGCGATTTGTATGTACC-CTTCG 157 consensus_3526#1 GAAAACCGGCCCCTATTCGGTGTGGCAGCAGCAGCGGCGGGTTTTGAATGCCCCGCAGCC 438 ** **** * *** * **** * * * **** *** * consensus_3526#0 TGATATTATGATTGAGTGGAAACAAGCGAGCGAAAGAGGGTTGCACAATCTGAATGACAA 654 consensus_3526#2 TGCCGA-AT--------------------------------------------------- 165 consensus_3526#1 TGAAGG-ATGCCTGGAGTGGTATTTCTTGTTTGTGTTCCGACGGCAAATTATGAAAGGAC 497 ** ** consensus_3526#0 ATAATTAAATGCAAA--------------------------------------------- 669 consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 GTTAATTAACGGCATAAACTATGCATCTAATAATGAACAGTTACCGCCACCGGAATCGAC 557 consensus_3526#0 ------------------------------------------------------------ consensus_3526#2 ------------------------------------------------------------ consensus_3526#1 CCCCCAACAACACTCAACAACACCGGCACGTAATCTTAATATAAATCTGCCAGAAAACGT 617 consensus_3526#0 ------------------------------- consensus_3526#2 ------------------------------- consensus_3526#1 GACCCAAGGTCCGCGAGGGCCACGGGCACCC 648 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||