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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_353#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGATTGATAGTTTGGGCTGACAAATTGTTGCGCCCGGTCCTAGTGCTGCCGCGTGTGACGTGTTTGTTTGTTTAGTTTTTGTTTCGAGAGAAAACGCAACAGTATGTGAAGGAGCGACTATCAAAACGTGTGTTGGGCGCGTGAGAGCAGTGTCAACAAACGGCATACAAACACAACAATCCTTCCCGCGGATATTTATTAGATAGTTTGAACATTACCCCCATCTGTACGATTAGAGAGAGGAGACTCGATGCGGATGAAACACGTACACGACAAACATATACACAAAGGCATTATTGAACATCAAAGGAAAAGCCCCCCCCCCCTCTCTCTTTACAATAGCGTTTAAGTTACGGCCCGTTTTATGTGTTGGGGGTGGATTTGTTTGAAATTGCTTTATTTATTCCGGATGAATTTAAATAATTTGCTCGAAATCGAAGGTGGTTTCGAAAGTTGTGCGCACAGAAGCTCTGATGGCAGGAGGAGAATGTATTGGAACGCTGCAGAAAACAACAACTGAGCAGTGAAAAAAAAAACAAAGGGCAACCCAAACACAAGCCAACAGCACGATAACTGCACACACGGGTACGAAAAGGGGAATTGTAGCGAAACAATTGAATAGCTATCAGCACTAGGTTTAGTTAAAAGCAGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACA]
[+] EMBL BM625444 [CCGATTGATAGTTTGGGCTGACAAATTGTTGCGCCCGGTCCTAGTGCTGCCGCGTGTGACGTGTTTGTTTGTTTAGTTTTTGTTTCGAGAGAAAACGCAACAGTATGTGAAGGAGCGACTATCAAAACGTGTGTTGGGCGCGTGAGAGCAGTGTCAACAAACGGCATACAAACACAACAATCCTTCCCGCGGATATTTATTAGATAGTTTGAACATTACCCCCATCTGTACGATTAGAGAGAGGAGACTCGATGCGGATGAAACACGTACACGACAAACATATACACAAAGGCATTATTGAACATCAAAGGAAAAGCCCCCCCCCCCTCTCTCTTTACAATAGCGTTTAAGTTACGGCCCGTTTTATGTGTTGGGGGTGGATTTGTTTGAAATTGCTTTATTTATTCCGGATGAATTTAAATAATTTGCTCGAAATCGAAGGTGGTTTCGAAAGTTGTGCGCACAGAAGCTCTGATGGCAGGAGGAGAATGTATTGGAACGCTGCAGAAAACAACAACTGAGCAGTGAAAAAAAAAACAAAGGGCAACCCAAACACAAGCCAACAGCACGATAACTGCACACACGGGTACGAAAAGGGGAATTGTAGCGAAACAATTGAATAGCTATCAGCACTAGGTTTAGTTAAAAGCAGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACA]
consensusID : consensus_353#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[CAGAATCGCCACGAGGTNTAGAAACAATTGAATAGCTATCAGCACTAGGGTTTAGTTAAAAGCCGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACACGTGCGCGCGTTTTTGTTTTTTTTGTTGACATATTGTCTTTGCCGTTTTTACGCTCTGCTAGAAGAATAGTTTATCTACTTTGTGTTTCGTTAGCCCCTACCCGGCCGGGTTCGGCTGCCTAATATATAATAAAACCAAATTTCAATCTCGTTTAAGTCAATCAAAGATTTACCTACCTACTCTTATTCATTCTTGCGAGGCTCAACGAATGTGAGTGTAGAAGCGAACAGCTTGGGCAGGGGTGAAGCGGGGTTTGAGGGGTGGGAGGAAAGCCGATGTGCAGCAGTGGCGCTTTGGCTGTCTTGCTTTCCCACGACCACCCCCTGCCAGATATTTAGCGAGTAAGATATAACTGTGCTTAAATGTGTAGAAGAAACAAGGGNACATGAATGTGTCTTTGGGTGCTGTGCGTGCGTGTAGGAACANGAAGGACAACATTGGTCTTATGGTGGTCGAGTTCTTAAATTTCGGAGGAAA]
[+] EMBL BX466524 [CAGAATCGCCACGAGGTNTAGAAACAATTGAATAGCTATCAGCACTAGGGTTTAGTTAAAAGCCGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACACGTGCGCGCGTTTTTGTTTTTTTTGTTGACATATTGTCTTTGCCGTTTTTACGCTCTGCTAGAAGAATAGTTTATCTACTTTGTGTTTCGTTAGCCCCTACCCGGCCGGGTTCGGCTGCCTAATATATAATAAAACCAAATTTCAATCTCGTTTAAGTCAATCAAAGATTTACCTACCTACTCTTATTCATTCTTGCGAGGCTCAACGAATGTGAGTGTAGAAGCGAACAGCTTGGGCAGGGGTGAAGCGGGGTTTGAGGGGTGGGAGGAAAGCCGATGTGCAGCAGTGGCGCTTTGGCTGTCTTGCTTTCCCACGACCACCCCCTGCCAGATATTTAGCGAGTAAGATATAACTGTGCTTAAATGTGTAGAAGAAACAAGGGNACATGAATGTGTCTTTGGGTGCTGTGCGTGCGTGTAGGAACANGAAGGACAACATTGGTCTTATGGTGGTCGAGTTCTTAAATTTCGGAGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_353#0 CCGATTGATAGTTTGGGCTGACAAATTGTTGCGCCCGGTCCTAGTGCTGCCGCGTGTGAC 60
consensus_353#1 ------------------------------------------------------------
consensus_353#0 GTGTTTGTTTGTTTAGTTTTTGTTTCGAGAGAAAACGCAACAGTATGTGAAGGAGCGACT 120
consensus_353#1 -------------------CAGAATCGCCACGAGGTNTAGAAACAATTGAA----TAGCT 37
* *** * * * * * **** **
consensus_353#0 ATCAAAACGTGTGTTGGGCGCGTGAGAGCAGT-GTCAACAAACGGCATA---CAAACACA 176
consensus_353#1 ATCAGCACTAGGGTTTAGT---TAAAAGCCGCCGCCGCCCAACGGAACGGCTCTGGCCTC 94
**** ** * *** * * * *** * * * * ***** * * *
consensus_353#0 ACAATCCTTCCCGCGGATATTTATTAGATAGTTTGA-ACATTACCC---CCATCTGTACG 232
consensus_353#1 TCAACACGTGC-GCGCGTTTTTGTTTTTTTTGTTGACATATTGTCTTTGCCGTTTTTACG 153
*** * * * *** * *** ** * **** * *** * ** * * ****
consensus_353#0 ATTAGAGAGAGGAGACTCGATGCGGATGAAACACGTACACGACAAACATATACACAAAGG 292
consensus_353#1 CTCTGCTAGAAGAA-----TAGTTTATCTACTTTGTGTTTCGTTAGCCCCTACCCGGCCG 208
* * *** ** * ** * ** * * *** * *
consensus_353#0 CATTATTGAACATCAAAGGAAAAGCCCCCCCCCCCTCTCTCTTTACAATAGCGTTTAAGT 352
consensus_353#1 GGT--TCGGCTGCCTAATATATAATAAAACCA--------AATTTCAATCTCGTTTAAGT 258
* * * * ** * * ** ** **** *********
consensus_353#0 TACGGCCCGTTTTATGTGTTGGGGGTGGATTTGTTTGAAATTGCTTTATTTATTCCGG-A 411
consensus_353#1 CAATCAAAGATTTACCTACCTACTCTTATTCATTCTTGCGAGGCTCAACGAATGTGAGTG 318
* * **** * * * * * *** * ** *
consensus_353#0 TGAATTTAAATAATTTGCTCGAAATCGAAGGTGGTTTCGAAAGTTGTGCGCACAGAAGCT 471
consensus_353#1 TAGAAGCGAACAGCTTGGGCAGGGGTGAAGCGGGGTTTGAGGGGTGGGAGGAAAGCCGAT 378
* * ** * *** * **** ** ** ** * ** * * * ** * *
consensus_353#0 CTGATGGCAGGAGGAGAATGTATTGGAACGCTG-CAGAAAACAACAACTGAGCAGTGAAA 530
consensus_353#1 GTG-CAGCAGT-GGCGCTTTGGCTGTCTTGCTTTCCCACGACCACCCCCTGCCAGATATT 436
** **** ** * * ** *** * * ** ** * *** *
consensus_353#0 AAAAAAACAAAGGGCAACCCAAACACAAGCCAACAGCACGATAACTGCACACACGGGTAC 590
consensus_353#1 TAGCGAGTAAGATATAACT-GTGCTTAAATGTGTAGAA-GAAACAAGGGNACATGAATGT 494
* * ** *** * ** ** * ** * * *** * *
consensus_353#0 GAAAAGGGGAATTGTAGCGAAACAATTGAATAGCTATCAGCACTAGGTTTAGTTAAAAGC 650
consensus_353#1 GTCTTTGGGTGCTGT-GCGTGCGTGTAGGA--ACANGAAGGACAACATTGGTCTTATGGT 551
* *** *** *** * * * * ** ** * ** * * *
consensus_353#0 AGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACA 687
consensus_353#1 GGTCGAGTTCTTAAATTTCGGAGGAAA---------- 578
* ** * * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||