These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATGCCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCACCGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCCAGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTGGTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGCGATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGACACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATCGCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCGCGCGATGGCGAGTTCA] [+] EMBL BM650424 [CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATGCCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCACCGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCCAGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTGGTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGCGATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGACACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATCGCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCGCGCGATGGCGAGTTCA] consensusID : consensus_3641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG] [+] EMBL AGA285598 [AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG] consensusID : consensus_3641#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 101 fasta sequence [AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA] [+] EMBL AL695887 [AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3641#0 CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATG 60 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 ------------------------------------------------------------ consensus_3641#0 CCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCAC 120 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 ------------------------------------------------------------ consensus_3641#0 CGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAG 180 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 ------------------------------------------------------------ consensus_3641#0 GTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATG 240 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 ------------------------------------------------------------ consensus_3641#0 GGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACA 300 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 ------------------------------------------------------------ consensus_3641#0 ATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCC 360 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 ------------------------------------------------------------ consensus_3641#0 AGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTG 420 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 ----------------------------AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCG 32 consensus_3641#0 GTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGC 480 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 GCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAAT 92 consensus_3641#0 GATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGA 540 consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 GGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGT 152 consensus_3641#0 CACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATC 600 consensus_3641#2 ---------------------------------------------------AGGCAGATT 9 consensus_3641#1 AGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGT 212 * consensus_3641#0 GCAGCAAGGATGATAGCGG-----TGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGAC 655 consensus_3641#2 GCCCCAGGCTT--TAGAGG-----GGTGCATGC-TCGGCCAAGCTGGAACCGAATCTGAC 61 consensus_3641#1 GGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAAC 272 * * * * ** * * *** **** **** * * ** consensus_3641#0 CATTTCGATATC-GCGCGATGGCGAGTTCA------------------------------ 684 consensus_3641#2 CATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA-------------------- 101 consensus_3641#1 CACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTG 332 ** * * * ** * * ** consensus_3641#0 ------------------------------------------------------------ consensus_3641#2 ------------------------------------------------------------ consensus_3641#1 AGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATG 392 consensus_3641#0 ------------ consensus_3641#2 ------------ consensus_3641#1 CCACAGAGAAGG 404 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||