Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3641 cluster # 3641       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3641#0 length = 684 sequences # 1  
consensus_3641#1 length = 404 sequences # 1  
consensus_3641#2 length = 101 sequences # 1  

consensusID : consensus_3641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence
                              [CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATGCCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCACCGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCCAGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTGGTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGCGATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGACACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATCGCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCGCGCGATGGCGAGTTCA]

[+] EMBL BM650424             [CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATGCCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCACCGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCCAGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTGGTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGCGATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGACACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATCGCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCGCGCGATGGCGAGTTCA]


>consensus_3641#0 CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATG CCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCAC CGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAG GTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATG GGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACA ATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCC AGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTG GTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGC GATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGA CACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATC GCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTT CGATATCGCGCGATGGCGAGTTCA



consensusID : consensus_3641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence
                              [AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG]

[+] EMBL AGA285598            [AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG]


>consensus_3641#1 AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAA ACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCG ATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACA GGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGG CAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGA CAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGC ACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG



consensusID : consensus_3641#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 101
fasta sequence
                              [AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA]

[+] EMBL AL695887             [AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA]


>consensus_3641#2 AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGA CCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3641#0      CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATG 60
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      CCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCAC 120
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      CGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAG 180
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      GTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATG 240
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      GGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACA 300
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      ATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCC 360
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      AGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTG 420
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ----------------------------AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCG 32
                                                                                  

consensus_3641#0      GTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGC 480
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      GCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAAT 92
                                                                                  

consensus_3641#0      GATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGA 540
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      GGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGT 152
                                                                                  

consensus_3641#0      CACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATC 600
consensus_3641#2      ---------------------------------------------------AGGCAGATT 9
consensus_3641#1      AGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGT 212
                                                                          *       

consensus_3641#0      GCAGCAAGGATGATAGCGG-----TGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGAC 655
consensus_3641#2      GCCCCAGGCTT--TAGAGG-----GGTGCATGC-TCGGCCAAGCTGGAACCGAATCTGAC 61
consensus_3641#1      GGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAAC 272
                      *    * *  *   **  *      * ***     ****   ****     * *    **

consensus_3641#0      CATTTCGATATC-GCGCGATGGCGAGTTCA------------------------------ 684
consensus_3641#2      CATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA-------------------- 101
consensus_3641#1      CACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTG 332
                      **   * *  *    ** *      *  **                              

consensus_3641#0      ------------------------------------------------------------
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      AGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATG 392
                                                                                  

consensus_3641#0      ------------
consensus_3641#2      ------------
consensus_3641#1      CCACAGAGAAGG 404
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)