|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 899 fasta sequence
[AGAATCCCCACGAGTTAAACAGAAGAAGAAAGTGGGCTGAGACATATTTTAGGCAAATAATAATAACGAAAACAAAATTGAATAAGATGCTACAGTAAACATGTAAGGCTCTACTGTTAGGATGGAAGCGGTGTGGTATATGATATGATAAAACCACACACACAGGCACACAATGTTGCAGCTGTGTGTGCGCGCTGCGCTCAGCAACAGTAAACCGCGCAAACAGTATCANAGGCACACAGGCAGGCAAGGCGCACACACACATTTACAAAGCAAATTCTAAGTANATATTTCTCTAAAAGGTTCCTTAGGGCGTCAAACAACAACACCGGCANACTTCCNAGGGGTGGGGTCCGGCTACACGGCAACACCAAAAAAAAACAAAAACCACAGGCCAACACAACACACACCAAGCAAACAGGGGCACCGCGCAGGCACACACAGCCCGCTTGCTTCNCTGCCTTTCCGCAAGTCACACATGGCCCGGGGTTGGNTTGGAAGTTTCGTTCACCGCCGAAGGGTCATCAGTNCCGTTTTCCCTTAACTTTCNTCTGGCACTTGGCACTTACAGGCTTTATCTGGGCCTTATGGGAACGCGCAAACCACGGGGNACCCCGGAAGTTACCGGAACGAGNGCGGCCGGTTAACACCCAAAAGGCGATTCAACAACCCCGGGNGCAATTTGGGCCCCGGCAACACAGCCGCGCTTCCAACGGNACACACACGGGTTCGGGCACCCGGCAAGGCTCACACAGCGGCACACACAGCTGTGCACACCACACTTGGGGANTCGCGTTCAGGCTCCGGGTTACAGCACCGCCGCGACACCCGGCGGGCAAACCATTTCCCACATTTACCCACACCACACAAANAGCACCCCAAACCGCAAACGGAGCTNT]
[+] EMBL AL692261 [AGAATCCCCACGAGTTAAACAGAAGAAGAAAGTGGGCTGAGACATATTTTAGGCAAATAATAATAACGAAAACAAAATTGAATAAGATGCTACAGTAAACATGTAAGGCTCTACTGTTAGGATGGAAGCGGTGTGGTATATGATATGATAAAACCACACACACAGGCACACAATGTTGCAGCTGTGTGTGCGCGCTGCGCTCAGCAACAGTAAACCGCGCAAACAGTATCANAGGCACACAGGCAGGCAAGGCGCACACACACATTTACAAAGCAAATTCTAAGTANATATTTCTCTAAAAGGTTCCTTAGGGCGTCAAACAACAACACCGGCANACTTCCNAGGGGTGGGGTCCGGCTACACGGCAACACCAAAAAAAAACAAAAACCACAGGCCAACACAACACACACCAAGCAAACAGGGGCACCGCGCAGGCACACACAGCCCGCTTGCTTCNCTGCCTTTCCGCAAGTCACACATGGCCCGGGGTTGGNTTGGAAGTTTCGTTCACCGCCGAAGGGTCATCAGTNCCGTTTTCCCTTAACTTTCNTCTGGCACTTGGCACTTACAGGCTTTATCTGGGCCTTATGGGAACGCGCAAACCACGGGGNACCCCGGAAGTTACCGGAACGAGNGCGGCCGGTTAACACCCAAAAGGCGATTCAACAACCCCGGGNGCAATTTGGGCCCCGGCAACACAGCCGCGCTTCCAACGGNACACACACGGGTTCGGGCACCCGGCAAGGCTCACACAGCGGCACACACAGCTGTGCACACCACACTTGGGGANTCGCGTTCAGGCTCCGGGTTACAGCACCGCCGCGACACCCGGCGGGCAAACCATTTCCCACATTTACCCACACCACACAAANAGCACCCCAAACCGCAAACGGAGCTNT]
consensusID : consensus_3669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 851 fasta sequence
[ATGCTACAGTAAACATGTAAGGCTCTACTGTTAGGATGGAAGCGGTGTGGTATATGATATGATAAAACAAAAAGGAAAATGTGAGCGTGTGTGCGCGCGCGCTAGAAAGTAAACGCGAAAAGTATAAGGAAAGGAGGAAGGCGAAAAATTTACAAAGAAATTCTAAGTAATATTTTTTAAGTCTAGGCTAAAAAACGAATTTTGGTGGTCGTAAGGAAACAAAAACAAACAAGCAAAAAAAAGAAAGGGACGGAGAAAAGCGTGTTTTGCTCGAAAAGCGGTGTGAGTTTTTTGTTTCTTCTATTTGATGATAGTTTGCTTGAGAAAGGACCGATCGAGGGCGTACAGTAACGGATGCGAAGAGTAGAAAGTGAGAGTAGCAAGGACATGGTGTGTGTGAGGACGGACTCATCAAAACCACAGTAAAGAGAGCAGGCAATTTATTAAAATGCGCGAAATATGAAAAGAAATCTTTCTATTCTCCTAAAATACACAAAATCAGGCCTTAAACTTTACTTGTGTCACACAATACCAAACACCCAAAGGGGGGAAGTCTTATTCTTCTTTTTATTCGAAAACATAATGGCAATATTTAGAAAAGGTCCTCCTATTTCTACGATTGTTTCGATCTCGCCAAACAATTCTAGACAACAAATGACAAAAACTAAGTACAAACTATGTTTTCGTTTTTTTTCGGATCTGATTTATATCCCTCTCATACGATTTGGCCTTTTAAAATACTTCGTTTTTTTATTGTTCTTTTATGTGTTTGTGAAAACACATTCTCTAAATTGTTTAATATATTTTCTGTTAAATTTCACTCCCCCAATACACACAGTTTGTGTATGGTG]
[+] EMBL BX613175 [ATGCTACAGTAAACATGTAAGGCTCTACTGTTAGGATGGAAGCGGTGTGGTATATGATATGATAAAACAAAAAGGAAAATGTGAGCGTGTGTGCGCGCGCGCTAGAAAGTAAACGCGAAAAGTATAAGGAAAGGAGGAAGGCGAAAAATTTACAAAGAAATTCTAAGTAATATTTTTTAAGTCTAGGCTAAAAAACGAATTTTGGTGGTCGTAAGGAAACAAAAACAAACAAGCAAAAAAAAGAAAGGGACGGAGAAAAGCGTGTTTTGCTCGAAAAGCGGTGTGAGTTTTTTGTTTCTTCTATTTGATGATAGTTTGCTTGAGAAAGGACCGATCGAGGGCGTACAGTAACGGATGCGAAGAGTAGAAAGTGAGAGTAGCAAGGACATGGTGTGTGTGAGGACGGACTCATCAAAACCACAGTAAAGAGAGCAGGCAATTTATTAAAATGCGCGAAATATGAAAAGAAATCTTTCTATTCTCCTAAAATACACAAAATCAGGCCTTAAACTTTACTTGTGTCACACAATACCAAACACCCAAAGGGGGGAAGTCTTATTCTTCTTTTTATTCGAAAACATAATGGCAATATTTAGAAAAGGTCCTCCTATTTCTACGATTGTTTCGATCTCGCCAAACAATTCTAGACAACAAATGACAAAAACTAAGTACAAACTATGTTTTCGTTTTTTTTCGGATCTGATTTATATCCCTCTCATACGATTTGGCCTTTTAAAATACTTCGTTTTTTTATTGTTCTTTTATGTGTTTGTGAAAACACATTCTCTAAATTGTTTAATATATTTTCTGTTAAATTTCACTCCCCCAATACACACAGTTTGTGTATGGTG]
[+] EMBL BX610571 [ GGTATATGATATGATAAAACAAAAAGGAAAATGTGAGCGTGTGTGCGCGCGCGCTAGAAAGTAAACGCGAAAAGTATAAGGAAAGGAGGAAGGCGAAAAATTTACAAAGAAATTCTAAGTAATATTTTTTAAGTCTAGGCTAAAAAACGAATTTTGGTGGTCGTAAGGAAACAAAAACAAACAAGCAAAAAAAAGAAAGGGACGGAGAAAAGCGTGTTTTGCTCGAAAAGCGGTGTGAGTTTTTTGTTTCTTCTATTTGATGATAGTTTGCTTGAGAAAGGACCGATCGAGGGCGTACAGTAACGGATGCGAAGAGTAGAAAGTGAGAGTAGCAAGGACATGGTGTGTGTGAGGACGGACTCATCAAAACCACAGTAAAGAGAGCAGGCAATTTATTGAAATGCGCGAAATATGAAAAGAAATCTTTCTATTCTCCTAAAATACA AAAATCAGGCCTTAAACTTTACTTGTGTCACACAATACCAAACACCCAAAGGGGGGAAGTCTTATGCTTCTTTTTATTCGAAAACATAATGGCAATATTTAGAAAAGGTCCTCCTATTTCTACGATTGTTTCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3669#0 AGAATCCCCACGAGTTAAACAGAAGAAGAAAGTGGGCTGAGACATATTTTAGGCAAATAA 60
consensus_3669#1 ------------------------------------------------------------
consensus_3669#0 TAATAACGAAAACAAAATTGAATAAGATGCTACAGTAAACATGTAAGGCTCTACTGTTAG 120
consensus_3669#1 --------------------------ATGCTACAGTAAACATGTAAGGCTCTACTGTTAG 34
**********************************
consensus_3669#0 GATGGAAGCGGTGTGGTATATGATATGATAAAACCACACACACAGGCACACAATGTTGCA 180
consensus_3669#1 GATGGAAGCGGTGTGGTATATGATATGATAAAACAA-----AAAGGAAAA------TGTG 83
********************************** * * *** * * **
consensus_3669#0 GCTGTGTGTGCGCGCTGCGCTCAGCAACAGTAAACCGCGCAAACAGTATCANAGGCACAC 240
consensus_3669#1 AGCGTGTGTGCGCGC-GCGCTAG---AAAGTAAA---CGCGAAAAGTAT--AAGGAAAGG 134
************ ***** * ****** *** ** ***** *** *
consensus_3669#0 AGGCAGGCAAGGCGCACACACACATTTACAAAGCAA-ATTCTAAGTANATATTTCTCTAA 299
consensus_3669#1 AGGAAGGCGAAAAATTTACAAAGAAATTCTAAGTAATATTTTTTAAGTCTAGGCTAAAAA 194
*** **** * *** * * * * *** ** *** * ** **
consensus_3669#0 AAGGTTCCTTAGGG-CGTCAAACAACAACACCGG-CANACTTCCNAGGGGTGGGGTCCGG 357
consensus_3669#1 ACGAATTTTGGTGGTCGTAAGGAAACAAAAACAAACAAGCAAAAAAAAGAAAGGGACGGA 254
* * * * ** *** * ***** * * ** * * * *** * *
consensus_3669#0 CTACACGGCAACAC---CAAAAAAAAACAAAAACCACAGGCCAACACAACAC----ACAC 410
consensus_3669#1 GAAAAGCGTGTTTTGCTCGAAAAGCGGTGTGAGTTTTTTGTTTCTTCTATTTGATGATAG 314
* * * * **** * * * * * *
consensus_3669#0 CAAGCAAACAGGGGCACCGCGCAGGCACACACAGCC-CGCTTGCTTCNCTGCCTTTCCGC 469
consensus_3669#1 TTTGCTTGAGAAAGGACCGATCGAGGGCGTACAGTAACGGATGCGAAGAGTAGAAAGTGA 374
** * **** * * * **** ** *** *
consensus_3669#0 AAGTCACACATGGCCCGGGGTTGGNTTGGA-AGTTTCGTTCA--CCGCCGAAGGGTCATC 526
consensus_3669#1 GAGTAGCA-AGGACATGGTGTGTGTGAGGACGGACTCATCAAAACCACAGTAAAGAGAGC 433
*** ** * * * ** ** * *** * ** * * ** * * * * * *
consensus_3669#0 AGTNCCGTTT----------------------------TCCCTTAACTTTCNTCTGGCAC 558
consensus_3669#1 AG-GCAATTTATTAAAATGCGCGAAATATGAAAAGAAATCTTTCTATTCTCCTAAAATAC 492
** * *** ** * * * ** * **
consensus_3669#0 TTGGCACTTA----CAGGCTTTATCTGGGCCTTATGG----GAACGCGCAAACCACGGGG 610
consensus_3669#1 ACAAAATCAGGCCTTAAACTTTACTTGTGTCACACAATACCAAACACCCAAAGGGGGGAA 552
* * ***** ** * * * *** * **** **
consensus_3669#0 NACCCCGGAAGTTACCGGAACGAGNGCGGCCGGTTAACACCCAAAAGGCGATTCAACAAC 670
consensus_3669#1 GTCTTATTCTTCTTTTTATTCGAAAACATAATGGCAATATTTAGAAAA-GGTCCTCCTAT 611
* * *** * * ** * * ** * * * * *
consensus_3669#0 CCCGGGNGCAATTTGGGCCCCGGCAACACAGCCGCGCTTCCAACGGNACACACACGGGTT 730
consensus_3669#1 TTCTACGATTGTTTCGATCTCGCCAA-ACAAT-----TCTAGACAACAAATGACAAAAAC 665
* *** * * ** *** *** * ** * *
consensus_3669#0 CGGGCACCCGGCAAGGCTCACACAGCGGCACACA-CAGCTGTGCACACCACACTTGGGGA 789
consensus_3669#1 TAAGTACA-AACTATGTTTTCGTTTTTTTTCGGATCTGATTTATATCCCTCTCATACGAT 724
* ** * * * * * * * * * * * * ** * * * *
consensus_3669#0 NTCGCGTTC--AGGCTCCGGGTTACAGCACCGCCGCGACACCCGGCGG-GCAAAC-CATT 845
consensus_3669#1 TTGGCCTTTTAAAATACTTCGTTTTTTTATTGTTCTTTTATGTGTTTGTGAAAACACATT 784
* ** ** * * *** * * * * * * **** ****
consensus_3669#0 TCCCACATTTACCCACACCACACAAANAGCACCCCAAACCGCAAACGGA-GCTNT----- 899
consensus_3669#1 CTCTAAATTGTTTAATATATTTTCTGTTAAATTTCACTCCCCCAATACACACAGTTTGTG 844
* * *** * * * ** ** * ** * * *
consensus_3669#0 -------
consensus_3669#1 TATGGTG 851
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||