These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence [CCGGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGCTGGATTACGACCGGCTACCAGAGCGAACATCTTGTGTGATCAAGAATGCTGTTGAATCGAGTCGTTGGCCTGATTCTAGATACTTCCAACGAGAGTTCAAAGGGCTTCCGTGCAACGGTGCATCCTGTCAATCTAGTACGCGAGGCCCTCATCAAATTTGCTCACATGAGCCAGAAGTAGAAACTAAAAAGAAATCTAAATTTGGATGTGTGTATACCATATCGAATATACCCAAAAGTTATATTATATCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGTGATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGCTGCACATCCGTCCGAAATTGTCATCATCATTTCTTTTTATAAATTAATGAATCAACACCTACGTGCCCATACGCAATAATAAATTACACGTATAAATATCTGATTTT] [+] EMBL BM609526 [CCGGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGCTGGATTACGACCGGCTACCAGAGCGAACATCTTGTGTGATCAAGAATGCTGTTGAATCGAGTCGTTGGCCTGATTCTAGATACTTCCAACGAGAGTTCAAAGGGCTTCCGTGCAACGGTGCATCCTGTCAATCTAGTACGCGAGGCCCTCATCAAATTTGCTCACATGAGCCAGAAGTAGAAACTAAAAAGAAATCTAAATTTGGATGTGTGTATACCATATCGAATATACCCAAAAGTTATATTATATCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGTGATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGCTGCACATCCGT ] [+] EMBL BM622412 [ ccgGTATACCATATCGAATATACCCAAAAGTTATATTATATCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGTGATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGCTGCACATCCGTCCGAAATTGTCATCATCATTTCTTTTTATAAATTAATGAATCAACACCTACGTGCCCATACGCAATAATAAATTACACGTATAAATATCTGATTTT] consensusID : consensus_3681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CCGCTGGAAAGTAATGCTGATCAGCATTTACTAGAATTTTATAATAGAGATAGAGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATGTAAGTAGAAAAAATATCGATTTAGAATCGAAAGACCGACATACACATGCCAATGAATGCTATATTAATCGGTTTGTTGAAAATCTCGCCAAATTGCAACCTGAACTTTACGCCAACCTTGACGTTAACCATCCTTGGAAGAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGC] [+] EMBL BM611506 [CCGCTGGAAAGTAATGCTGATCAGCATTTACTAGAATTTTATAATAGAGATAGAGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATGTAAGTAGAAAAAATATCGATTTAGAATCGAAAGACCGACATACACATGCCAATGAATGCTATATTAATCGGTTTGTTGAAAATCTCGCCAAATTGCAACCTGAACTTTACGCCAACCTTGACGTTAACCATCCTTGGAAGAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3681#0 ---------------------------------------------------CCGGATTCT 9 consensus_3681#1 CCGCTGGAAAGTAATGCTGATCAGCATTTACTAGAATTTTATAATAGAGATAGAGATTCT 60 ****** consensus_3681#0 TGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTA 69 consensus_3681#1 TGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTA 120 ************************************************************ consensus_3681#0 CCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACA 129 consensus_3681#1 CCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACA 180 ************************************************************ consensus_3681#0 TATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATT 189 consensus_3681#1 TATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATT 240 ************************************************************ consensus_3681#0 GATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTT 249 consensus_3681#1 GATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTT 300 ************************************************************ consensus_3681#0 TCTATGGATAATCGTGCCGGAGAATCTCCATTGA-AATCGAGCTACCAGC-TGGAT-TAC 306 consensus_3681#1 TCTATGGATGTAAGTAG-AAAAAATATCGATTTAGAATCGAAAGACCGACATACACATGC 359 ********* ** * *** ** *** * ****** *** * * * * * consensus_3681#0 GACCGGCTACCAGAGCGAACATCTTGTGTGATCAAGAATGCTGTTGAATCGAGTCGTTGG 366 consensus_3681#1 CAATGAATGCTATATTAATCGGTTTG-----TTGAAAATCTCGCCAAATTGCAACCTGAA 414 * * * * * * * * *** * * *** * *** * * * consensus_3681#0 CCTGATTCTAGATACTTCCAACGAGAGTTCAAAGGGCTTCCGTGCAACGGTGCATCCTGT 426 consensus_3681#1 CTTTACGCCA-ACCTTGACGTTAACCATCCTTGGAAGAATCGTGCCGGAGAATCTCCATT 473 * * * * * * * * * * * * ***** * *** * consensus_3681#0 CAATCTAGTACGCGAGGCCCTCATCAAATTTGCTCACATGAGCCAGAAGTAGAAACTAAA 486 consensus_3681#1 GAAATCGAGCTACCAGC------------------------------------------- 490 ** * ** consensus_3681#0 AAGAAATCTAAATTTGGATGTGTGTATACCATATCGAATATACCCAAAAGTTATATTATA 546 consensus_3681#1 ------------------------------------------------------------ consensus_3681#0 TCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGT 606 consensus_3681#1 ------------------------------------------------------------ consensus_3681#0 GATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGC 666 consensus_3681#1 ------------------------------------------------------------ consensus_3681#0 TGCACATCCGTCCGAAATTGTCATCATCATTTCTTTTTATAAATTAATGAATCAACACCT 726 consensus_3681#1 ------------------------------------------------------------ consensus_3681#0 ACGTGCCCATACGCAATAATAAATTACACGTATAAATATCTGATTTT 773 consensus_3681#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||