These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [AGTAANCCTATTGGCTCATAACAGCGCCACGCTGAAGAGTCGTCCGTCNTACCATCCTGATGGAAAGACAGTCTCTCTGATCACCAGCTATCACACNCTGAAGGAGCAGTCAGGAAGATCAACATACAAGCATCCGCGACGAGTCAATCTGCAAAGGTAAACTATGACTACAGACACAGGAGAAGTCAATCGTACTACCGTAATGNAGGNNACGACCGTCCGTTTATACAGCAGNTATCACAGGATGAGAGANCTATCACAAGAGTCAACATCAAGCATCAGTCGAAGATATTTTCCAAAAGAATGAACNCTATCGGTCAAAACCTTCCAACGCTANAGAGTCACATACAGTGTCAACCAACTNGAGTAGAAATATAGAATACAAACCCATACAGAGCTACAGGCACCNNCTGCTGGCTATGATATGAAGTTGCNAGGCCGTGCTACCGTACACTATACATAGCATNCAACCAAAAACAATNACCTATAACGTATGGTCANAGTATATACTNTGGCATACAAAGGACATAGGATTNANTTAGCATCCCTNGACAAAATTGGTATACACAACCAACAAAGAAAATAACAAGTCGATATAAACANAGGAGACACNNAANGGGGGTTGGNAATGGGTGAAAACTACAGACAACGGAATAATATNATCACCATAGCCTGGTAAATAAGTAAGGCGTN] [+] EMBL AL692579 [AGTAANCCTATTGGCTCATAACAGCGCCACGCTGAAGAGTCGTCCGTCNTACCATCCTGATGGAAAGACAGTCTCTCTGATCACCAGCTATCACACNCTGAAGGAGCAGTCAGGAAGATCAACATACAAGCATCCGCGACGAGTCAATCTGCAAAGGTAAACTATGACTACAGACACAGGAGAAGTCAATCGTACTACCGTAATGNAGGNNACGACCGTCCGTTTATACAGCAGNTATCACAGGATGAGAGANCTATCACAAGAGTCAACATCAAGCATCAGTCGAAGATATTTTCCAAAAGAATGAACNCTATCGGTCAAAACCTTCCAACGCTANAGAGTCACATACAGTGTCAACCAACTNGAGTAGAAATATAGAATACAAACCCATACAGAGCTACAGGCACCNNCTGCTGGCTATGATATGAAGTTGCNAGGCCGTGCTACCGTACACTATACATAGCATNCAACCAAAAACAATNACCTATAACGTATGGTCANAGTATATACTNTGGCATACAAAGGACATAGGATTNANTTAGCATCCCTNGACAAAATTGGTATACACAACCAACAAAGAAAATAACAAGTCGATATAAACANAGGAGACACNNAANGGGGGTTGGNAATGGGTGAAAACTACAGACAACGGAATAATATNATCACCATAGCCTGGTAAATAAGTAAGGCGTN] consensusID : consensus_3697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence [ATGCTCGAGGCCAAGAATCCGCACGAGNGTAAAGCATCATCATCAGAGTAAATCTTTGGCTCATAACAGCGCCACGCTGAAGAGTCGTTCGTTTACCATCCTG-ATGGAAAGACAGTCTCT-TGATCACCAGCGTATCACACCTGGAGGAGCA-GTCAGGAAGATCAACATCAAGCATCCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACTCAGACACAGGAGAGTCAATCGTCTACCGTAATGAAGGAACGACCGTCCGTTTATCAGCAGCTAGTCACAGTTGAGGAGAACTATCACNAAGAGTCAACATCAGAGGCGATCAGGTCGAAGTATTTTCCAGAGGGAGATGAACNACTATCGCTCGGANAAGCCGTTCGCAANCGGCGTAGCGAGAGTCAGAGTTCNNGTTGTCAAGNCCAANCTGAGNTGANAAGT] [+] EMBL BX469741 [ATGCTCGAGGCCAAGAATCCGCACGAGNGTAAAGCATCATCATCAGAGTAAATCTTTGGCTCATAACAGCGCCACGCTGAAGAGTCGTTCGTTTACCATCCTG ATGGAAAGACAGTCTCT TGATCACCAGCGTATCACACCTGGAGGAGCA GTCAGGAAGATCAACATCAAGCATCCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACTCAGACACAGGAGAGTCAATCGTCTACCGTAATGAAGGAACGACCGTCCGTTTATCAGCAGCTAGTCACAGTTGAGGAGAACTATCACNAAGAGTCAACATCAGAGGCGATCAGGTCGAAGTATTTTCCAGAGGGAGATGAACNACTATCGCTCGGANAAGCCGTTCGCAANCGGCGTAGCGAGAGTCAGAGTTCNNGTTGTCAAGNCCAANCTGAGNTGANAAGT] [+] EMBL AL930673 [ AAGAGTCGTTCGTTTACCATCCTGCATGGAAAGACAGTCTCTATGATCACCAGC TATCACACCTGGAGGAGCACGTCAGGAAGATCAACATCAAGCATCCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3697#0 ----------------------------------------------AGTAANCCTATTGG 14 consensus_3697#1 ATGCTCGAGGCCAAGAATCCGCACGAGNGTAAAGCATCATCATCAGAGTAAATCT-TTGG 59 ***** ** **** consensus_3697#0 CTCATAACAGCGCCACGCTGAAGAGTCGTCCGTCNTACCATCCTGATGGAAAGACAGTCT 74 consensus_3697#1 CTCATAACAGCGCCACGCTGAAGAGTCGTTCGT-TTACCATCCTGATGGAAAGACAGTCT 118 ***************************** *** ************************* consensus_3697#0 CTCTGATCACCAGC-TATCACACNCTGAAGGAGCAGTCAGGAAGATCAACATACAAGCAT 133 consensus_3697#1 CT-TGATCACCAGCGTATCACACC-TGGAGGAGCAGTCAGGAAGATCAACAT-CAAGCAT 175 ** *********** ******** ** ************************ ******* consensus_3697#0 CCGC-GACGAGTCAATCTGCAAAGGTAAACTATGACTACAGACACAGGAGAAGTCAATCG 192 consensus_3697#1 CCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACT-CAGACACAGGAGA-GTCAATCG 233 **** ******************************** ************* ******** consensus_3697#0 TACTACCGTAATGNAGGNNACGACCGTCCGTTTATACAGCAGNTA-TCACAGGATGAGAG 251 consensus_3697#1 T-CTACCGTAATGAAGGAA-CGACCGTCCGTTTAT-CAGCAGCTAGTCACAGTTGAGGAG 290 * *********** *** *************** ****** ** ****** *** consensus_3697#0 ANCTATCACAA-GAGTCAACATCAAGC---ATCAGTCGAAGATATTTTCCAAAAGAA--T 305 consensus_3697#1 AACTATCACNAAGAGTCAACATCAGAGGCGATCAGGTCGAAGTATTTTCCAGAGGGAGAT 350 * ******* * ************ ***** * ********* * * * * consensus_3697#0 GAACN-CTATCGGTCAAAACCTTCCAACGCTANAGAGTCACATACAGTGTCAACCAACTN 364 consensus_3697#1 GAACNACTATCGCTCGGAN-------AAGCCGT----TCGCAANCGGCGT-----AGCGA 394 ***** ****** ** * * ** ** ** * * ** * * consensus_3697#0 GAGTAGAAATATAGAATA-CAAACCCATACAGAGCT-ACAGGCACCNNCTGCTGGCTATG 422 consensus_3697#1 GAGTCAGAGTTCNNGTTGTCAAGNCCAANCTGAGNTGANAAGT----------------- 437 **** * * * *** *** * *** * * * * consensus_3697#0 ATATGAAGTTGCNAGGCCGTGCTACCGTACACTATACATAGCATNCAACCAAAAACAATN 482 consensus_3697#1 ------------------------------------------------------------ consensus_3697#0 ACCTATAACGTATGGTCANAGTATATACTNTGGCATACAAAGGACATAGGATTNANTTAG 542 consensus_3697#1 ------------------------------------------------------------ consensus_3697#0 CATCCCTNGACAAAATTGGTATACACAACCAACAAAGAAAATAACAAGTCGATATAAACA 602 consensus_3697#1 ------------------------------------------------------------ consensus_3697#0 NAGGAGACACNNAANGGGGGTTGGNAATGGGTGAAAACTACAGACAACGGAATAATATNA 662 consensus_3697#1 ------------------------------------------------------------ consensus_3697#0 TCACCATAGCCTGGTAAATAAGTAAGGCGTN 693 consensus_3697#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||