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Anopheles gambiae
cluster # 3711 cluster # 3711       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3711#0 length = 691 sequences # 2  
consensus_3711#1 length = 512 sequences # 1  

consensusID : consensus_3711#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 691
fasta sequence
                              [CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTTCCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTGGTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTTAGTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCT-------T-TCTCTCTC--TCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCTTACTAGCGTTTAATATACGAGCCTGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTTTCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA]

[+] EMBL BM582043             [CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTTCCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTGGTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTTAGTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCT       T TCTCTCTC  TCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCC                                                                                                                                     ]
[-] EMBL BX614220             [                                                                                                                                                                                                     CAAACGAAACAAAAAAGTAACTTCGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTCCGAATCCGAAACGATTTGGTTGCACTTCTTTCCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGC   TTTTTATCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGAATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAAGTTTGTCTAATTACTAGCGTTTAATATACGAGCCTGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTTTCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA]


>consensus_3711#0 CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTT CCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTG GTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATT TACATTACGGTTTACCACAAACGAAACAAAAAAGTAACTACGCAAGATGGATGAAAAATG ATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAA GACTTGGTTAGTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTTTCTCTCT CTCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGG CTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGAT TTAATAGCAACACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTA AACAAAAGGTTTGTCTCCTTACTAGCGTTTAATATACGAGCCTGCCTTGTCCATTTTGCT ACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTTTCCTTTAAAGAGATATCT GCTTATTTAAAATGGGTTTTAGTTAAGCTTA



consensusID : consensus_3711#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence
                              [ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCCACTCGTGTTGTTTTTTTTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG]

[+] EMBL CNS09FL2             [ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCCACTCGTGTTGTTTTTTTTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG]


>consensus_3711#1 ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTA CGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAATGATTAAG TCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTG GTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCTCTTTCTC TCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCC GAAGCTGATGGCTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAAT GCCACAGATTTAATAGCAACACACACACACACACGCATACACTCTTGCTCAAAACCTATC GGAAGTAAACAAAAGGTTTGTCTCCCACTCGTGTTGTTTTTTTTTTTTTTTCATCCTTAC GCATCTAATATTACACAACTCTCTCAGTTCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3711#0      CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTT 60
consensus_3711#1      ------------------------------------------------------------
                                                                                  

consensus_3711#0      CCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTG 120
consensus_3711#1      ------------------------------------------------------------
                                                                                  

consensus_3711#0      GTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATT 180
consensus_3711#1      -------ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATT 53
                             *****************************************************

consensus_3711#0      TACATTACGGTTTACCACAAACGAAACAAAAAAG-TAACTACGCAAGATGGATGAAAAAT 239
consensus_3711#1      TACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAAT 113
                      ********************************** *************************

consensus_3711#0      GATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAA 299
consensus_3711#1      GATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAA 173
                      ************************************************************

consensus_3711#0      AGACTTGGTTAGTTTT-CCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTTTCTCT 358
consensus_3711#1      AGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCT 233
                      ********* ****** ************************************* *****

consensus_3711#0      CTCTCTCTCTCTCTCTCTCTTT----------------TCTCCCTCACTTCTCTTGCCCA 402
consensus_3711#1      CTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCA 293
                      ** *******************                **********************

consensus_3711#0      CTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAA 462
consensus_3711#1      CTCTGCCGAAGCTGATGGCTTTTTTTT--CGCAACAGATTCTACTAACATCGAGGCATAA 351
                      ***************************  *******************************

consensus_3711#0      TGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCT 522
consensus_3711#1      TGTTACAATGCCACAGATTTAATAGCAACACACACACACACAC--GCATACACTCTTGCT 409
                      *******************************************  ***************

consensus_3711#0      CAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCTTACTAGCGTTTAATATACGAGCC 582
consensus_3711#1      CAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCC-ACTCGTGTTGTTTTT------T 462
                      ************************************  *** * ***   * *       

consensus_3711#0      TGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTT 642
consensus_3711#1      TTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG---------- 512
                      *   ** * ***  *    * * *  *  *      *  * *  *** **          

consensus_3711#0      TCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA 691
consensus_3711#1      -------------------------------------------------
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)