These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTTCCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTGGTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTTAGTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCT-------T-TCTCTCTC--TCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCTTACTAGCGTTTAATATACGAGCCTGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTTTCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA] [+] EMBL BM582043 [CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTTCCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTGGTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTTAGTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCT T TCTCTCTC TCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCC ] [-] EMBL BX614220 [ CAAACGAAACAAAAAAGTAACTTCGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTCCGAATCCGAAACGATTTGGTTGCACTTCTTTCCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGC TTTTTATCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGAATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAAGTTTGTCTAATTACTAGCGTTTAATATACGAGCCTGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTTTCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA] consensusID : consensus_3711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCCACTCGTGTTGTTTTTTTTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG] [+] EMBL CNS09FL2 [ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCCACTCGTGTTGTTTTTTTTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3711#0 CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTT 60 consensus_3711#1 ------------------------------------------------------------ consensus_3711#0 CCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTG 120 consensus_3711#1 ------------------------------------------------------------ consensus_3711#0 GTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATT 180 consensus_3711#1 -------ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATT 53 ***************************************************** consensus_3711#0 TACATTACGGTTTACCACAAACGAAACAAAAAAG-TAACTACGCAAGATGGATGAAAAAT 239 consensus_3711#1 TACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAAT 113 ********************************** ************************* consensus_3711#0 GATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAA 299 consensus_3711#1 GATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAA 173 ************************************************************ consensus_3711#0 AGACTTGGTTAGTTTT-CCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTTTCTCT 358 consensus_3711#1 AGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCT 233 ********* ****** ************************************* ***** consensus_3711#0 CTCTCTCTCTCTCTCTCTCTTT----------------TCTCCCTCACTTCTCTTGCCCA 402 consensus_3711#1 CTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCA 293 ** ******************* ********************** consensus_3711#0 CTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAA 462 consensus_3711#1 CTCTGCCGAAGCTGATGGCTTTTTTTT--CGCAACAGATTCTACTAACATCGAGGCATAA 351 *************************** ******************************* consensus_3711#0 TGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCT 522 consensus_3711#1 TGTTACAATGCCACAGATTTAATAGCAACACACACACACACAC--GCATACACTCTTGCT 409 ******************************************* *************** consensus_3711#0 CAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCTTACTAGCGTTTAATATACGAGCC 582 consensus_3711#1 CAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCC-ACTCGTGTTGTTTTT------T 462 ************************************ *** * *** * * consensus_3711#0 TGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTT 642 consensus_3711#1 TTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG---------- 512 * ** * *** * * * * * * * * * *** ** consensus_3711#0 TCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA 691 consensus_3711#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||