These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [ATCTATCTAACGGTGATATTAGTTTGCCAGACCTACCTGCCACCGGGCAAGGACAGCAAAACAGCAACGCGAGATGATCTGACCTGCAAAATTACCTACTGCTCCACTGTAAATCCTGGCGGCTGGGCCCCAGCGACCGTGCTGCGCGCTATCTATAAGAAAGAATATCCAAAGTTCCTTAAGCGTTTCACCGGATACGTTGTTGATCAATGTAAAGCGAAGCCGATCATGTATTAGAATCATCGGCAACGGCACAGAAGTAGGTTCTTCGGTTGGTTTATGATGTGTTTTTTTTATTATTATTTTTAAGATTTAAGAAGGTATCTAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGGTGGGTTTANGACTGGTCTGTGTCTACGTTTGTA] [+] EMBL BX622069 [ATCTATCTAACGGTGATATTAGTTTGCCAGACCTACCTGCCACCGGGCAAGGACAGCAAAACAGCAACGCGAGATGATCTGACCTGCAAAATTACCTACTGCTCCACTGTAAATCCTGGCGGCTGGGCCCCAGCGACCGTGCTGCGCGCTATCTATAAGAAAGAATATCCAAAGTTCCTTAAGCGTTTCACCGGATACGTTGTTGATCAATGTAAAGCGAAGCCGATCATGTATTAGAATCATCGGCAACGGCACAGAAGTAGGTTCTTCGGTTGGTTTATGATGTGTTTTTTTTATTATTATTTTTAAGATTTAAGAAGGTATCTAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGGTGGGTTTANGACTGGTCTGTGTCTACGTTTGTA] consensusID : consensus_3727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [CCGCCCACGCGTCCGAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGTTGGGTTTAGGACTGGTCTGTGTCTACG] [+] EMBL BM605220 [CCGCCCACGCGTCCGAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGTTGGGTTTAGGACTGGTCTGTGTCTACG] [+] EMBL AL692988 [ aggtTTACACACGGAAGTCACACG TCGATGCACTATTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3727#0 ATCTATCTAACGGTGATATTAGTTTGCCAGACCTACCTGCCACCGGGCAAGGACAGCAAA 60 consensus_3727#1 ------------------------------------------------------------ consensus_3727#0 ACAGCAACGCGAGATGATCTGACCTGCAAAATTACCTACTGCTCCACTGTAAATCCTGGC 120 consensus_3727#1 ------------------------------------------------------------ consensus_3727#0 GGCTGGGCCCCAGCGACCGTGCTGCGCGCTATCTATAAGAAAGAATATCCAAAGTTCCTT 180 consensus_3727#1 ------------------------------------------------------------ consensus_3727#0 AAGCGTTTCACCGGATACGTTGTTGATCAATGTAAAGCGAAGCCGATCATGTATTAGAAT 240 consensus_3727#1 ------------------------------------------------------------ consensus_3727#0 CATCGGCAACGGCACAGAAGTAGGTTCTTCGGTTGGTTTATGATGTGTTTTTTTTATTAT 300 consensus_3727#1 ------------------------------------------------------------ consensus_3727#0 TATTTTTAAGATTTAAGAAGGTATCT-AGATGTTGTTATATAGATATGGTGTTAGTGTGT 359 consensus_3727#1 ------------CCGCCCACGCGTCCGAGATGTTGTTATATAGATATGGTGTTAGTGTGT 48 * * ** ********************************* consensus_3727#0 GGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTT 419 consensus_3727#1 GGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTT 108 ************************************************************ consensus_3727#0 GCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTT 479 consensus_3727#1 GCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTT 168 ************************************************************ consensus_3727#0 AGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAAT 539 consensus_3727#1 AGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAAT 228 ************************************************************ consensus_3727#0 AGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATT 599 consensus_3727#1 AGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATT 288 ************************************************************ consensus_3727#0 GCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCT 659 consensus_3727#1 GCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCT 348 ************************************************************ consensus_3727#0 GTCGAACATATCTTGGAAAGTGGGGTTAGGGTGGGTTTANGACTGGTCTGTGTCTACGTT 719 consensus_3727#1 GTCGAACATATCTTGGAAAGTGGGGTTAGGTTGGGTTTAGGACTGGTCTGTGTCTACG-- 406 ****************************** ******** ****************** consensus_3727#0 TGTA 723 consensus_3727#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||