These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [CCCGAGTTAATTATTGGAAACAAAAATACTGCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGAGAGATAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAAACCATACACACAGACACATCACATTACTGTAGCACTTTTCCCCCAAACTAATTAACCTCTCGGTTTGTACTGGTGCCACGTTTTTGTGCACTTGTTCATGTGCACACGCCCTCTAGACTTTATGGAATGTGCTTCCGAGCGCAACAGGAATTCCCTAATTGCGGGGCAACACCAAGGCTAACGCGACACACAGGGGCTATCGGGCTGTGTATCTCGTGCTACTTCTCCGCCGTNNNACTANGCACTATCACAAACCAGCACAAATAGTATTCTCTTACCGCTCATCCCATCCCTCACACTCNAAAAATACCCCANGNCGCAGCGCAAAANCAAGCACACCGCGGCCTACTCACGACGGAGTACAGGTGGCAACGCAGTATATCATACGAANGGGGTAACCTACACTACCTATCTACTATNTACATACTACATACATCATATCATAANTCAATTGGCTCGCGCTGGCGTTGCGGCACGTNNNCATTCTCTANCTTAGC] [+] EMBL AL693032 [CCCGAGTTAATTATTGGAAACAAAAATACTGCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGAGAGATAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAAACCATACACACAGACACATCACATTACTGTAGCACTTTTCCCCCAAACTAATTAACCTCTCGGTTTGTACTGGTGCCACGTTTTTGTGCACTTGTTCATGTGCACACGCCCTCTAGACTTTATGGAATGTGCTTCCGAGCGCAACAGGAATTCCCTAATTGCGGGGCAACACCAAGGCTAACGCGACACACAGGGGCTATCGGGCTGTGTATCTCGTGCTACTTCTCCGCCGTNNNACTANGCACTATCACAAACCAGCACAAATAGTATTCTCTTACCGCTCATCCCATCCCTCACACTCNAAAAATACCCCANGNCGCAGCGCAAAANCAAGCACACCGCGGCCTACTCACGACGGAGTACAGGTGGCAACGCAGTATATCATACGAANGGGGTAACCTACACTACCTATCTACTATNTACATACTACATACATCATATCATAANTCAATTGGCTCGCGCTGGCGTTGCGGCACGTNNNCATTCTCTANCTTAGC] consensusID : consensus_3731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [CCGCCCACGCGTCCGCGGCCACCTGCTTTTTGATAGGCGCTGTGTGGAGCCGCGTGACTGAACTTTTGTGTGTAATAGTTAAACAAAATTTATTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGA] [+] EMBL BM620684 [CCGCCCACGCGTCCGCGGCCACCTGCTTTTTGATAGGCGCTGTGTGGAGCCGCGTGACTGAACTTTTGTGTGTAATAGTTAAACAAAATTTATTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGA] consensusID : consensus_3731#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGCCCACGCGTCCGTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGAGTGGCAAGCAGTATATCATACGAAAGGGGTAACCTACA] [+] EMBL BM639789 [CCGCCCACGCGTCCGTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGAGTGGCAAGCAGTATATCATACGAAAGGGGTAACCTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3731#1 CCGCCCACGCGTCCGCGGCCACCTGCTTTTTGATAGGCGCTGTGTGGAGCCGCGTGACTG 60 consensus_3731#2 ------------------------------------------------------------ consensus_3731#0 ------------------------------------------------------------ consensus_3731#1 AACTTTTGTGTGTAATAGTTAAACAAAATTTATTGGAAACAAAAATACTGCCTCCCATTA 120 consensus_3731#2 ------------------CCGCCCACGCGTCCGTGGAAACAAAAATACTGCCTCCCATTA 42 consensus_3731#0 -----------------CCCGAGTTAA--TTATTGGAAACAAAAATACTGC-TCCCATTA 40 * ****************** ******** consensus_3731#1 GCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACAC 180 consensus_3731#2 GCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACAC 102 consensus_3731#0 GCGAAAACGGATTTGGGGCGTTTCAGG-CCCAACAGAAACAGACACACCCACACATACAC 99 *************************** ******************************** consensus_3731#1 ACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAAT 240 consensus_3731#2 ACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAAT 162 consensus_3731#0 ACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAAT 159 ************************************************************ consensus_3731#1 GCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAAT 300 consensus_3731#2 GCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAAT 222 consensus_3731#0 GCGACGATGAGAACAGATAGAGAGAGAGATAGAGTGTGTGTGGTTAGGCATACATTTAAT 219 ************************ *** ******************************* consensus_3731#1 GTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCAT 360 consensus_3731#2 GTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCAT 282 consensus_3731#0 GTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCAT 279 ************************************************************ consensus_3731#1 AAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCT 420 consensus_3731#2 AAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCT 342 consensus_3731#0 AAGGAAAACCATACACACAGACACATCACATTACTGTAGCACTTTT-------------- 325 ******* ********************************** *** consensus_3731#1 AAATCCCCCAAAATAATTAACCTCTCAGTTTGT-TTGGTGCCACGTTTTTGTGCACTTGT 479 consensus_3731#2 AAATCCCCCAAAATAATTAACCTCTCAGTTTGT-TTGGTGCCACGTTTTTGTGCACTTGT 401 consensus_3731#0 ----CCCCCAAACTAATTAACCTCTCGGTTTGTACTGGTGCCACGTTTTTGTGCACTTGT 381 ******** ************* ****** ************************* consensus_3731#1 T-ATGTGCACACGCCCG-TAGACTTT-TGGAATGTGCTTTTGAG-GCAA-AGGAATTCCC 534 consensus_3731#2 T-ATGTGCACACGCCCG-TAGACTTT-TGGAATGTGCTTTTGAG-GCAA-AGGAATTCCC 456 consensus_3731#0 TCATGTGCACACGCCCTCTAGACTTTATGGAATGTGCTTCCGAGCGCAACAGGAATTCCC 441 * ************** ******** ************ *** **** ********** consensus_3731#1 TAATTGGGGGAAAA----AAGGCTAA-GCGAAA---AAGGGGTATTAGG-TGTGTGTTTG 585 consensus_3731#2 TAATTGGGGGAAAA----AAGGCTAA-GCGAAA---AAGGGGTATTAGG-TGTGTGTTTG 507 consensus_3731#0 TAATTGCGGGGCAACACCAAGGCTAACGCGACACACAGGGGCTATCGGGCTGTGTATCTC 501 ****** *** ** ******** **** * * *** *** ** ***** * * consensus_3731#1 ----TGTATTTCCGTTTGTAAAT--AGCACTATCACAA-CCAGCA--AAGTGTATTCT-T 635 consensus_3731#2 ----TGTATTTCCGTTTGTAAAT--AGCACTATCACAA-CCAGCA--AAGTGTATTCT-T 557 consensus_3731#0 GTGCTACTTCTCCGCCGTNNNACTANGCACTATCACAAACCAGCACAAATAGTATTCTCT 561 * * **** * ************ ****** ** ******* * consensus_3731#1 TAACGTTAATCCCATTTTT---ACATTAAAAATACCC--ACGCGCAGCGCAAAAA--AGC 688 consensus_3731#2 TAACGTTAATCCCATTTTT---ACATTAAAAATACCC--ACGCGCAGCGCAAAAA--AGC 610 consensus_3731#0 TACCGCTCATCCCATCCCTCACACTCNAAAAATACCCCANGNCGCAGCGCAAAANCAAGC 621 ** ** * ******* * ** ********** ************ *** consensus_3731#1 ACACCGCGGC-TACTCACGACGGAGTAGA------------------------------- 716 consensus_3731#2 ACACCGCGGC-TACTCACGACGGAGTAGAGTGGCAAGCAGTATATCATACGAAAGGGGTA 669 consensus_3731#0 ACACCGCGGCCTACTCACGACGGAGTACAGGTGGCAACGCAGTATATCATACGAANGGGG 681 ********** **************** * consensus_3731#1 ------------------------------------------------------------ consensus_3731#2 ACCTACA----------------------------------------------------- 676 consensus_3731#0 TAACCTACACTACCTATCTACTATNTACATACTACATACATCATATCATAANTCAATTGG 741 consensus_3731#1 ------------------------------------------ consensus_3731#2 ------------------------------------------ consensus_3731#0 CTCGCGCTGGCGTTGCGGCACGTNNNCATTCTCTANCTTAGC 783 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||