These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCCCGAGGTTTAACGCAAACTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTATTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAANTTATAGAAGGGGCCACTAATTGTNATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTACATANGACCACACATACCCGCCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGANAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGCGTGTACGANTATTGTACACTGACTTGTNCACTGCANGCACAAAATAACGAACAGACGATTGAGCTGAACTGACAGGACTCTTACGGCTTGAGTNTAGCGCCATCCATCTTACTGTACCCGGCTTCACTNTCANCCATGCATCACTTCTAGCTTAGCTTAAANNCCTGCCAAACTANCCTGNNCACGGGAAATGATGGTATCGTCTCGAACTATTAAATTGCA] [+] EMBL AL693072 [CCCCGAGGTTTAACGCAAACTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTATTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAANTTATAGAAGGGGCCACTAATTGTNATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTACATANGACCACACATACCCGCCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGANAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGCGTGTACGANTATTGTACACTGACTTGTNCACTGCANGCACAAAATAACGAACAGACGATTGAGCTGAACTGACAGGACTCTTACGGCTTGAGTNTAGCGCCATCCATCTTACTGTACCCGGCTTCACTNTCANCCATGCATCACTTCTAGCTTAGCTTAAANNCCTGCCAAACTANCCTGNNCACGGGAAATGATGGTATCGTCTCGAACTATTAAATTGCA] consensusID : consensus_3736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 658 fasta sequence [CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGGGACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAACCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTTTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAAATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTAATAAGACCACACATACCCGCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGAAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGGTGTACGATATTGTAACTGAATTGTAACTGAAGAAAAATAACGAAAGACGATTGAGCTGAATCGCCACAACAAC] [+] EMBL BM657691 [CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGGGACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAACCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTTTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAAATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTAATAAGACCACACATACCCGCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGAAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGGTGTACGATATTGTAACTGAATTGTAACTGAAGAAAAATAACGAAAGACGATTGAGCTGAATCGCCACAACAAC] [+] EMBL BM657707 [CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGGGACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAACCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCGCAGGCACGATCAGCTCACGAATGATTGATTTTGTTTTGCCTGAAGTATAAATATTTGGTCAAGAATGTACTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGGTTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAAATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGTTTAAACAAGATTAATAAGACCACACATACCCGCACGAACAGACAATTATTGTAGACTCAATCTGAGACCAGCGAAGGAAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAATAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGGTGTACGATATTGTAACTGAATTGTAACTGAAGAAAAATAACGAAAGACGATTGAGCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3736#0 ------------------------------------------------------------ consensus_3736#1 CCGGCCATCTTTTTTGTGGGCAGTTGGTGACTGAACTCATGTCAGTCCTTGGTAGCGGGG 60 consensus_3736#0 ----------------------------------------CCCCGAGGTTTAACGCAAA- 19 consensus_3736#1 GACGGTCCATTCTAGGCTTGAACCCACACGTCAACACCCAATACAAAACCGAACGCCAAA 120 * * ***** ** consensus_3736#0 -CTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATCCGCAGGCACGAT 78 consensus_3736#1 CCTGGATTAATTCAGCCTGAAACAAATATAGGCAAACGCCGATATATC-GCAGGCACGAT 179 *********************************************** *********** consensus_3736#0 CAGCTCACGAATGATTGATTTTGTATTTGCCTGAAGTATAAATATTTGGTCAAGAATGTA 138 consensus_3736#1 CAGCTCACGAATGATTGATTTTGT-TTTGCCTGAAGTATAAATATTTGGTCAAGAATGTA 238 ************************ *********************************** consensus_3736#0 CTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGG 198 consensus_3736#1 CTTTAACCCATTTCTAACAGAGACGAAACGAAAAGAAAACGATTTTTAAATGACTCGTGG 298 ************************************************************ consensus_3736#0 TTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAA 258 consensus_3736#1 TTTGTACACGAACGGTCATAATTCACCTAATAGGCTGCAATGTCGGCAATTCTGGTTTAA 358 ************************************************************ consensus_3736#0 NTTATAGAAGGGGCCACTAATTGTNATAATGAGGCAGAATCAGATAACCAATAGCACTGT 318 consensus_3736#1 ATTATAGAAGGGGCCACTAATTGTAATAATGAGGCAGAATCAGATAACCAATAGCACTGT 418 *********************** *********************************** consensus_3736#0 TTAAACAAGATTACATANGACCACACATACCCGCCACGAACAGACAATTATTGTAGACTC 378 consensus_3736#1 TTAAACAAGATTA-ATAAGACCACACATACCCGC-ACGAACAGACAATTATTGTAGACTC 476 ************* *** **************** ************************* consensus_3736#0 AATCTGAGACCAGCGAAGGANAAATGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAA 438 consensus_3736#1 AATCTGAGACCAGCGAAGGAAAA-TGGATTCGCAGCGTGCACGTGCTTTCAAACAATCAA 535 ******************** ** ************************************ consensus_3736#0 TAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAGCGTGTACGANT 498 consensus_3736#1 TAATACACTGGGAATCGCGGCATTCCCCGCCAGAGCACGTGTTACGGAG-GTGTACGAT- 593 ************************************************* ******** consensus_3736#0 ATTGTACACTGACTTGTNCACTGCANGCACAAAATAACGAACAGACGATTGAGCTGAACT 558 consensus_3736#1 ATTGTA-ACTGAATTGTA-ACTGAAGA---AAAATAACGAA-AGACGATTGAGCTGAATC 647 ****** ***** **** **** * *********** **************** consensus_3736#0 GACAGGACTCTTACGGCTTGAGTNTAGCGCCATCCATCTTACTGTACCCGGCTTCACTNT 618 consensus_3736#1 GCCACAACAAC------------------------------------------------- 658 * ** ** consensus_3736#0 CANCCATGCATCACTTCTAGCTTAGCTTAAANNCCTGCCAAACTANCCTGNNCACGGGAA 678 consensus_3736#1 ------------------------------------------------------------ consensus_3736#0 ATGATGGTATCGTCTCGAACTATTAAATTGCA 710 consensus_3736#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||