These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1111 fasta sequence [GCGAGCAAGCATTTGGTGTACCGGACGGGAGCGAACCAACACCGGACGGGCGGGATGGGCAAGCAGCTGAGCCGGTTGCTGTACCAGGAGCGCGAACCAATCGATCCGATGGTGTTGCTTCGCGGCCAGGAGCTACGGCGGCACATCGAGCGGGCTCGGTTTCGCTGCCGGCTGCTGGAGCAGGAACGCGACCGGATGTGCGGTGGAATGCAGCAGCTGCGCAATCGGCTGAATGCGGCCTGTGATAGCAACATTGAGCGAGAGTCGGCACTGATGGAGCGCTATCGGACGTACGGGCGGGAGAAGGAGCAGCTGTACCAACAGAAGGGCTTACGCTAGCCAGAAGGACAGCGTGCGTGAGGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAAGGGGCTGAACGAAATTTATTACATTAAATCGACGAGTCAGGGCATCTACACCATTAACTATGTACCATTGCCGAATGCGGAATCGTACACGGACGCAACGCCAGCACTGGCCCTCAGCGTTGCTCTTGGCTTCGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACGGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAACGATGGATCGAGACTTTCCCCTGCACTGTCGCTCGGGACCAGCGCCGAACGCGCTGCTGTATGGGGTGTACCTGTTGAATCAGAACATTTCCCAGCTCAAGCATCAGCTCTCGCTGAGCCGGGGCGACCCGCGGGCCACGCTCGTTAATCTGCAGGACATTCTCACCATCCCCGGCATCGGCGGGCCGCTGCAGAAGCGTGATCTTGAGGAAGCGTTCCAAATGCTACCCTCGTCCGTGTTCGGGGCGTCATCGCCCGGGTTTATTTCGCTGTCGACTGCCGGTGGGAGCAGTAGCGGTAGCAGCAGTAGTGGATCGTTCCTTCGTGACAGCCCCTCTAGTAATAGAATTTCCCGCTCGGTTGATAACTACACGGACCGAAGGCAGCAGATGCAAAGGCACTACCAGCTTAATAGACATCCGTTGCAGCAGGCAAAAAGGCTGTCGAGCAGCAGCAGCAGTGCC] [+] EMBL BX609285 [GCGAGCAAGCATTTGGTGTACCGGACGGGAGCGAACCAACACCGGACGGGCGGGATGGGCAAGCAGCTGAGCCGGTTGCTGTACCAGGAGCGCGAACCAATCGATCCGATGGTGTTGCTTCGCGGCCAGGAGCTACGGCGGCACATCGAGCGGGCTCGGTTTCGCTGCCGGCTGCTGGAGCAGGAACGCGACCGGATGTGCGGTGGAATGCAGCAGCTGCGCAATCGGCTGAATGCGGCCTGTGATAGCAACATTGAGCGAGAGTCGGCACTGATGGAGCGCTATCGGACGTACGGGCGGGAGAAGGAGCAGCTGTACCAACAGAAGGGCTTACGCTAGCCAGAAGGACAGCGTGCGTGAGGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAAGGGGCTGAACGAAATTTATTACATTAAATCGACGAGTCAGGGCATCTACACCATTAACTATGTACCATTGCCGAATGCGGAATCGTACACGGACGCAACGCCAGCACTGGCCCTCAGCGTTGCTCTTGGCTTCGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACGGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAACGATGGATCGAGACTTTCCCCTGCACTGTCGCTCGGGACCAGCGCCGAACGCGCTGCTGTATGGGGTGTACCTGTTGAATCAGAACATTTCCCAGCTCAAGCATCAGC ] [+] EMBL BX612674 [ TACGCTAGCCAGAAGGACAGCGTTCGTGAGGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAAGGGGCTGAACGAAATTTATTACATTAAATCGACGAGTCAGGGCATCTACACCATTAACGATGTACCATTGCCGAATGCGGAATCGTACACGGACGCAACGCCAGCACTGGCCCTCAGCGTTGCTCTTGGCTTCGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACGGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAACGATGGATCGAGACTTTCCCCTGCACTGTCGCTCGGGACCAGCGCCGAACGCGCTGCTGTATGGGGTGTACCTGTTGAATCAGAACATTTCCCAGCTCAAGCATCAGCTCTCGCTGAGCCGGGGCGACCCGCGGGCCACGCTCGTTAATCTGCAGGACATTCTCACCATCCCCGGCATCGGCGGGCCGCTGCAGAAGCGTGATCTTGAGGAAGCGTTCCAAATGCTACCCTCGTCCGTGTTCGGGGCGTCATCGCCCGGGTTTATTTCGCTGTCGACTGCCGGTGGGAGCAGTAGCGGTAGCAGCAGTAGTGGATCGTTCCTTCGTGACAGCCCCTCTAGTAATAGAATTTCCCGCTCGGTTGATAACTACACGGACCGAAGGCAGCAGATGCAAAGGCACTACCAGCTTAATAGACATCCGTTGCAGCAGGCAAAAAGGCTGTCGAGCAGCAGCAGCAGTGCC] consensusID : consensus_3762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence [TGCAAGAATCNCCACGAGGTGCCATCAGTTGCTAAATGGGGCTGAACGAAATTTATTACATTAAATCTGACGAGTCAGTGGCATCTACACCATTAACTGATGTACCATTGCCTGAATGCGTGAATCTGTACACGGACTGCAACTGCCAGCACTGGCCCTCAGCTGTTGCTCTTGTGCTTCTGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACTGGTTCCCGTTCGAAGATAGTGGACAAATTTAAGCTAATACAACTGAATTGGATCGAGACTTTCCCCTTGCACTGNCGCTCGGGGACAGATGGCCGAACATGCCGCCTGCTGTATGGGGGTGTAACCTGGTTGGAAATCNACGAACACATTTACCCCAGGTTCAATNCGCAATTCAAATACCTTCNTCCTCCTATTAAANCACGAATATTAAGTAAACCCCCNNCAANATAGTACACCAACAGTCAACACCAATATAAATCANTTTTCAAAACTCANAAANANATTAACTACTAAACAAAAATCACCCCACAACAACATATANAAGNAANAAANACCACCCTTGTCAAAACAAAAACAAATATAACACACAATTNGNAAAANTAGGATAAAAAACANGATGTTAACCACACAAAAAACTGTTGCGATAAAAACACCACACATCAGAAAAAACCNNAGATANNTAAAAANCAACGANGTNAAGGAATAACAAANAGCANAAAANACCANGAAANAAAAANNAAAAAAAATACAGCAAGANAAGATAAAGCAACNAAAAAAAANANANAAAGAAAGAGAAGAAAAANAACAAANAAAAAACAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAGACAGANAAAAAAAAAAAATATACCAAGAAAANAAA] [+] EMBL AL693474 [TGCAAGAATCNCCACGAGGTGCCATCAGTTGCTAAATGGGGCTGAACGAAATTTATTACATTAAATCTGACGAGTCAGTGGCATCTACACCATTAACTGATGTACCATTGCCTGAATGCGTGAATCTGTACACGGACTGCAACTGCCAGCACTGGCCCTCAGCTGTTGCTCTTGTGCTTCTGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAATCCCATTAAGTATGACTGGTTCCCGTTCGAAGATAGTGGACAAATTTAAGCTAATACAACTGAATTGGATCGAGACTTTCCCCTTGCACTGNCGCTCGGGGACAGATGGCCGAACATGCCGCCTGCTGTATGGGGGTGTAACCTGGTTGGAAATCNACGAACACATTTACCCCAGGTTCAATNCGCAATTCAAATACCTTCNTCCTCCTATTAAANCACGAATATTAAGTAAACCCCCNNCAANATAGTACACCAACAGTCAACACCAATATAAATCANTTTTCAAAACTCANAAANANATTAACTACTAAACAAAAATCACCCCACAACAACATATANAAGNAANAAANACCACCCTTGTCAAAACAAAAACAAATATAACACACAATTNGNAAAANTAGGATAAAAAACANGATGTTAACCACACAAAAAACTGTTGCGATAAAAACACCACACATCAGAAAAAACCNNAGATANNTAAAAANCAACGANGTNAAGGAATAACAAANAGCANAAAANACCANGAAANAAAAANNAAAAAAAATACAGCAAGANAAGATAAAGCAACNAAAAAAAANANANAAAGAAAGAGAAGAAAAANAACAAANAAAAAACAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAGACAGANAAAAAAAAAAAATATACCAAGAAAANAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3762#0 GCGAGCAAGCATTTGGTGTACCGGACGGGAGCGAACCAACACCGGACGGGCGGGATGGGC 60 consensus_3762#1 ------------------------------------------------------------ consensus_3762#0 AAGCAGCTGAGCCGGTTGCTGTACCAGGAGCGCGAACCAATCGATCCGATGGTGTTGCTT 120 consensus_3762#1 ------------------------------------------------------------ consensus_3762#0 CGCGGCCAGGAGCTACGGCGGCACATCGAGCGGGCTCGGTTTCGCTGCCGGCTGCTGGAG 180 consensus_3762#1 ------------------------------------------------------------ consensus_3762#0 CAGGAACGCGACCGGATGTGCGGTGGAATGCAGCAGCTGCGCAATCGGCTGAATGCGGCC 240 consensus_3762#1 ------------------------------------------------------------ consensus_3762#0 TGTGATAGCAACATTGAGCGAGAGTCGGCACTGATGGAGCGCTATCGGACGTACGGGCGG 300 consensus_3762#1 ------------------------------------------------------------ consensus_3762#0 GAGAAGGAGCAGCTGTACCAACAGAAGGGCTTACGCTAGCCAGAAGGACAGCGTGCGTGA 360 consensus_3762#1 ------------------------------------------------------------ consensus_3762#0 GGTATGCGCAAAGATGCTAATGGTGCGCCATCAGTTGCTAAA-GGGGCTGAACGAAATTT 419 consensus_3762#1 ------TGCAAGAATCNCCACGAGGTGCCATCAGTTGCTAAATGGGGCTGAACGAAATTT 54 **** ** * * * **************** ***************** consensus_3762#0 ATTACATTAAATC-GACGAGTCAG-GGCATCTACACCATTAACT-ATGTACCATTGCC-G 475 consensus_3762#1 ATTACATTAAATCTGACGAGTCAGTGGCATCTACACCATTAACTGATGTACCATTGCCTG 114 ************* ********** ******************* ************* * consensus_3762#0 AATGCG-GAATC-GTACACGGAC-GCAAC-GCCAGCACTGGCCCTCAGC-GTTGCTCTTG 530 consensus_3762#1 AATGCGTGAATCTGTACACGGACTGCAACTGCCAGCACTGGCCCTCAGCTGTTGCTCTTG 174 ****** ***** ********** ***** ******************* ********** consensus_3762#0 -GCTTC-GTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAA 588 consensus_3762#1 TGCTTCTGTTGCCCACGCTGTGATGATGTGTTCCTCGTTTTTAGATATTCCCTTACGAAA 234 ***** ***************************************************** consensus_3762#0 TCCCATTAAGTATGAC-GGTTCCCGTTCGAAGATAGTGGACCAAATTAAGCTACTACCAA 647 consensus_3762#1 TCCCATTAAGTATGACTGGTTCCCGTTCGAAGATAGTGGACAAATTTAAGCTAATACAAC 294 **************** ************************ ** ******** *** * consensus_3762#0 CGA--TGGATCGAGACTTTCCCCT-GCACTGTCGCTCGGGACCAGC--GCCGAACGCGC- 701 consensus_3762#1 TGAATTGGATCGAGACTTTCCCCTTGCACTGNCGCTCGGGGACAGATGGCCGAACATGCC 354 ** ******************* ****** ******** *** ******* ** consensus_3762#0 ---TGCTGTATGGGG-TGTACCT--GTTG------AATCAGAACATTT--CCCAGCTCAA 747 consensus_3762#1 GCCTGCTGTATGGGGGTGTAACCTGGTTGGAAATCNACGAACACATTTACCCCAGGTTCA 414 ************ **** * **** * * ****** ***** * * consensus_3762#0 GCATCAGCTCTCGCTGAGCCGGGGCGACCCGCGGGCCACGCTCGTTAA--------TCTG 799 consensus_3762#1 ATNCGCAATTCAAATACCTTCNTCCTCCTATTAAANCACGAATATTAAGTAAACCCCCNN 474 * * * * **** **** * consensus_3762#0 CAGGACATTCTCACCATCCCCGGCATCGGCG--GGCCGCTG--CAGAAGCGTGATCTTGA 855 consensus_3762#1 CAANATAGTACACCAACAGTCAACACCAATATAAATCANTTTTCAAAACTCANAAANANA 534 ** * * * * * * ** * * * ** ** * * consensus_3762#0 GGAAGCGTTC--CAAATGCTACCCT-CGTC--CGTGTTCGGGGCGT---CATCGCCCGGG 907 consensus_3762#1 TTAACTACTAAACAAAAATCACCCCACAACAACATATANAAGNAANAAANACCACCCTTG 594 ** * **** **** * * * * * * * * *** * consensus_3762#0 TTTATTTCGCTGTCGACTGCCGGTGGGAGCAGTAGCGGTAGCAGCAGTAGTGGATCGTT- 966 consensus_3762#1 TCAAAACAAAAACAAATATAACACACAATTNGNAAAANTAGGATAAAAAACANGATGTTA 654 * * * * * * *** * * * *** consensus_3762#0 -CCTTCGTGACAGCCCCTCTAGTAATAGAATTTCCCGCTCGGTTGATAACTACACGGACC 1025 consensus_3762#1 ACCACACAAAAAACTGTTGCGATAAAAACACCACACATCAGAAAAAACCNNAGATANNTA 714 ** * * * * *** * * * * * * * * consensus_3762#0 GAAGGCAGCAGATGCAAAGGCACTACCAGCTTAATAGACATCCGTTGCAGCAGGCAAAAA 1085 consensus_3762#1 AAAANCAAC-GANGTNAAGGAATAACAAANAGCANAAAANACCANGAAANAAAAANNAAA 773 ** ** * ** * **** * ** * * * * ** * * *** consensus_3762#0 GGCTGTCGAGCAGCAGCAG-CAGTGCC--------------------------------- 1111 consensus_3762#1 AAAAATACAGCAAGANAAGATAAAGCAACNAAAAAAAANANANAAAGAAAGAGAAGAAAA 833 * **** * ** * ** consensus_3762#0 ------------------------------------------------------------ consensus_3762#1 ANAACAAANAAAAAACAAAGAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAGACAGANAA 893 consensus_3762#0 --------------------------- consensus_3762#1 AAAAAAAAAATATACCAAGAAAANAAA 920 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||