These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 701 fasta sequence [CCGGTGAAGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGACGACGAGCTGCGGAAGCTGTCCGGAGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAAACGCAACGGGCATCAGGCGAATGGCGAGCGATCGTCGACATTCCACATTCCTCGCAGCCTGGACATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTACACCGAATACCAGTGGCTAGTCGATTTTAGCTTGTACTCCGCCATCGTGTACACTGGTTTCCGAGGTTTATCATTTTTTCTATCCACTGGAAGGAAGAAGTCAATTTGAGCATGCTCTGGTGCCTTTCTGGGTTGTGTTTTTCGCATTTAAACTACTTGCCTCTCTCACAGTGCAGTATTTCAAGAGCGAGGAATCTATTGGTGAACGATCCACCTGTATC] [+] EMBL BM644076 [CCGGTGAAGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGACGACGAGCTGCGGAAGCTGTCCGGAGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAAACGCAACGGGCATCAGGCGAATGGCGAGCGATCGTCGACATTCCACATTCCTCGCAGCCTGGACATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTACACCGAATACCAGTGGCTAGTCGATTTTAGCTTGTACTCCGCCATCGTGTACACTGGTTTCCGAGGTTTATCATTTTTTCTATCCACTGGAAGGAAGAAGTCAATTTGAGCATGCTCTGGTGCCTTTCTGGGTTGTGTTTTTCGCATTTAAACTAC ] [+] EMBL BM606626 [ ccgGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGAT AAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGACGACGAGCTGCGGAAGCTGTCCGGGGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAAACGCAACGGGCATCAGGCGAATGGCGAGCGGTCGTCGACATTCCACATTCCTCGCAGCCTGGATATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTACACCGAGTACCAGTGGCTAGTCGATTTTAGCTTATACTCCGCCATCGTGTACACT GTTTCCGAGGTTTATCATTTCTTCTATCCACT GAAGGAAGAAGTCAATTTGAGCATGCTCTGGTGCC TTCT GGTCGTGTTTTTCGCATTCAAACTGCTTGCCTCTCTCACAGTGCAGTATTTCAAGAGCGAGGAATCTATTGGTGAACGATCCACCTGTATC] consensusID : consensus_3765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CCGCCCACGCGTCCGCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGA] [+] EMBL BM612541 [CCGCCCACGCGTCCGCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3765#0 CCGGTGAAGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCG 60 consensus_3765#1 -------------------------CCGCCCACGCGTCCGCGTGTATGAAAACGTGCTCG 35 * * ** * ******************** consensus_3765#0 TAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAA 120 consensus_3765#1 TAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAA 95 ************************************************************ consensus_3765#0 ACCATTAACGCACATTCGTAGGATAAGCGATAAAAAACACCACAGAATGGCACTGCTTGG 180 consensus_3765#1 ACCATTAACGCACATTCGTAGGATAAGCGATAAAA--CACCACAGAATGGCACTGCTTGG 153 *********************************** *********************** consensus_3765#0 CGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTT 240 consensus_3765#1 CGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTT 213 ************************************************************ consensus_3765#0 TTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGA 300 consensus_3765#1 TTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGA---- 269 ******************************************************** consensus_3765#0 CGACGAGCTGCGGAAGCTGTCCGGAGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAA 360 consensus_3765#1 ------------------------------------------------------------ consensus_3765#0 ACGCAACGGGCATCAGGCGAATGGCGAGCGATCGTCGACATTCCACATTCCTCGCAGCCT 420 consensus_3765#1 ------------------------------------------------------------ consensus_3765#0 GGACATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTA 480 consensus_3765#1 ------------------------------------------------------------ consensus_3765#0 CACCGAATACCAGTGGCTAGTCGATTTTAGCTTGTACTCCGCCATCGTGTACACTGGTTT 540 consensus_3765#1 ------------------------------------------------------------ consensus_3765#0 CCGAGGTTTATCATTTTTTCTATCCACTGGAAGGAAGAAGTCAATTTGAGCATGCTCTGG 600 consensus_3765#1 ------------------------------------------------------------ consensus_3765#0 TGCCTTTCTGGGTTGTGTTTTTCGCATTTAAACTACTTGCCTCTCTCACAGTGCAGTATT 660 consensus_3765#1 ------------------------------------------------------------ consensus_3765#0 TCAAGAGCGAGGAATCTATTGGTGAACGATCCACCTGTATC 701 consensus_3765#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||