These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCCCACGCGTCCGGCCAAGATCTGGACACGATAAACCTGTAAATCCAAGGTGGTATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACTTGACTGCAACGAGTTAACAACAAAACCAGTGTCCACAGGAGAGGTGTGTTAAGTGTCCCATGTTTTGCTTTTTATGTTGTTTTTTTTTTAATACTCCGATTTCCGTGTTGGTTTGAAAATTGGAAAGAATTATTTTGCCTCCACCGTGTGAGCTACAAATTTTAAACTCAATACACCAACATTCTCTGTACCAATCGATGCGAACATAGTTAAGAAACGGACCGCAAATTAAGACGCTAACACACACGCTGAGGAGGAAAGGTACTTAAGCGAATGTTGATATCTGCCAAACGTAATCCGCAATCCGTGGCACTGGCCGGATGTTAAAACAGCAGCACAACCAACCACCCCCCTCCCTCCCTCCCCCCTCCTGCCTGTACCAAATAACCGTATAAAACCCCGCGAGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAA] [+] EMBL BM606267 [CCGCCCACGCGTCCGGCCAAGATCTGGACACGATAAACCTGTAAATCCAAGGTGGTATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACTTGACTGCAACGAGTTAACAACAAAACCAGTGTCCACAGGAGAGGTGTGTTAAGTGTCCCATGTTTTGCTTTTTATGTTGTTTTTTTTTTAATACTCCGATTTCCGTGTTGGTTTGAAAATTGGAAAGAATTATTTTGCCTCCACCGTGTGAGCTACAAATTTTAAACTCAATACACCAACATTCTCTGTACCAATCGATGCGAACATAGTTAAGAAACGGACCGCAAATTAAGACGCTAACACACACGCTGAGGAGGAAAGGTACTTAAGCGAATGTTGATATCTGCCAAACGTAATCCGCAATCCGTGGCACTGGCCGGATGTTAAAACAGCAGCACAACCAACCACCCCCCTCCCTCCCTCCCCCCTCCTGCCTGTACCAAATAACCGTATAAAACCCCGCGAGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAA] consensusID : consensus_3770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CCGGCTGGCATCACGCTTCTACTTTGTCGATGTGTTCCCCAGCTTACCAGATAAGATTCGTGTACAGCAACGGCTGGCGCTACTGCGTTCCCGGCAGAGCAGTGACGTCTTGAGGACACCGTCCGCCCGCAAGGCACGCCGCTCGTTACGCTCCGGCTATGCTTTCGCCCATCAGGAAGGATTTGGCCGGCTTATTACGTCCGGTAAAATTATGCGCAAACTGCCCCAGGACTTTGCCTTCCCGTTGGGGCTGGGCAGCAAGAAGCAACAGTCGACGGAATCAACCAAAAACAACAATAACAACAACAATAGCAGCAATAACGCTAATAACGCCTCGAATGTGGTCAATGGTGCTGGGGCCGTTGGGACACGAACCGGTACGAACACTGCGACCACAACGAGCCTGTCGGCGATGGCAGCAGTCACCACCTTGACCGTCAATGGTAATCAGCAGCAGCAGCAGCAGCTGGTTAACCTGCCCGGCAGCTCGAACGGCGGTGATCAGCACAGTCCGCGGGCACCGTGCCAAGATCTGGACACGATAAACCTGTAAATCCGAGGTGATATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACT] [+] EMBL BM616041 [CCGGCTGGCATCACGCTTCTACTTTGTCGATGTGTTCCCCAGCTTACCAGATAAGATTCGTGTACAGCAACGGCTGGCGCTACTGCGTTCCCGGCAGAGCAGTGACGTCTTGAGGACACCGTCCGCCCGCAAGGCACGCCGCTCGTTACGCTCCGGCTATGCTTTCGCCCATCAGGAAGGATTTGGCCGGCTTATTACGTCCGGTAAAATTATGCGCAAACTGCCCCAGGACTTTGCCTTCCCGTTGGGGCTGGGCAGCAAGAAGCAACAGTCGACGGAATCAACCAAAAACAACAATAACAACAACAATAGCAGCAATAACGCTAATAACGCCTCGAATGTGGTCAATGGTGCTGGGGCCGTTGGGACACGAACCGGTACGAACACTGCGACCACAACGAGCCTGTCGGCGATGGCAGCAGTCACCACCTTGACCGTCAATGGTAATCAGCAGCAGCAGCAGCAGCTGGTTAACCTGCCCGGCAGCTCGAACGGCGGTGATCAGCACAGTCCGCGGGCACCGTGCCAAGATCTGGACACGATAAACCTGTAAATCCGAGGTGATATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACT] consensusID : consensus_3770#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CCGCCCACGCGTCCGGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAAAGACGGGAAAAGACGGATCGCCAAGCGATGCTCATACAAAAAAAAACGCCTCCATCATCATCCCGTTTTTGAGTTTCCATCATTCACACGCCTCATCTCGAATGTTTCGAATCTCGATTTTCTTTTTTTTTTACTAAGATCATTCATATTTAGACAAACTACGAGCGCAACTAACAATTTTTTGGGGCGCGAAACAGGCAGAACGAAGGAAAGTGAATAACATTTAGCATTATTACACATTATGAACTTATTGTGATTGTCCTGTGACTACATATTTGATATATTACGAGAGCA] [+] EMBL BM634015 [CCGCCCACGCGTCCGGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAAAGACGGGAAAAGACGGATCGCCAAGCGATGCTCATACAAAAAAAAACGCCTCCATCATCATCCCGTTTTTGAGTTTCCATCATTCACACGCCTCATCTCGAATGTTTCGAATCTCGATTTTCTTTTTTTTTTACTAAGATCATTCATATTTAGACAAACTACGAGCGCAACTAACAATTTTTTGGGGCGCGAAACAGGCAGAACGAAGGAAAGTGAATAACATTTAGCATTATTACACATTATGAACTTATTGTGATTGTCCTGTGACTACATATTTGATATATTACGAGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3770#0 CCGCCCACGCGTCCGGCCAAGATCTGGACACGATAAACCTGTAAATCCAAGGTGGTATCC 60 consensus_3770#2 ------------------------------------------------------------ consensus_3770#1 -----------------------------------------------CCGGCTGGCATCA 13 consensus_3770#0 CACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACTTGACTGCAACGAGTTAACAA 120 consensus_3770#2 ------------------------------------------------------------ consensus_3770#1 CGCTTCTACTTTGTCGATGTGTTCCCCAGCTTACCAGATAAGATTCGTGTACAGCAACGG 73 consensus_3770#0 CAAA-ACCAGTGTCCACAGGAGAGGTGTGTTAAGTGTCCCATGTTTTGCTT-TTTATGTT 178 consensus_3770#2 ------------------------------------------------------------ consensus_3770#1 CTGGCGCTACTGCGTTCCCGGCAGAGCAGTGACGTCTTGAGGACACCGTCCGCCCGCAAG 133 consensus_3770#0 GTTTTTTTTTTAATACTC-CGATTTCCGTGTTGGTTTGAAAATTGGAAAGAATTATTTTG 237 consensus_3770#2 ------------CCGCCCACGCGTCCGGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGA 48 consensus_3770#1 GCACGCCGCTCGTTACGCTCCGGCTATGCTTTCGCCCATCA---GGAAGGATTTGGCCGG 190 * * * * * * * ** consensus_3770#0 CCTCCACCGTGTGAGCTACAAATTTTAAACTCAATACACCAACATTCTCTGTACCAATCG 297 consensus_3770#2 CAAATAACAATAATAACACAAGTATT--TCATAGGAGAACAA-GTCGAGCAAACCGCCTA 105 consensus_3770#1 CTTATTACGTCCGGTA---AAATTATGCGCAAACTGCCCCAGGACTTTGCCTTCCCGTTG 247 * * ** * * * * ** ** consensus_3770#0 ATGCGAACATAGTTAAGAAACGGACCGCAAATTAAGACGCTAACACACACGCTGAGGAGG 357 consensus_3770#2 GAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAA-GCATAGTATTGACACG 164 consensus_3770#1 GGGC-TGGGCAGCAAGAAGCAACAGTCGACGGAATCAACCAAAAACA-ACAATAACAACA 305 * * * * * ** ** * * * consensus_3770#0 AAAGGTACTTAAGCGAATGTTGATATCTGCCAAACGTAATCCGCAATCCGTGGCACTGGC 417 consensus_3770#2 ACCACGGCTTTAGGGGAGAGTAAGATAAAGACGGGAAAAGACGGATCGCCAAGCGATGCT 224 consensus_3770#1 ACAATAGC-------AGCAATAACGCTAATAACGCCTCGAATGTGGTCAATGGTGCTGG- 357 * * * * * * ** consensus_3770#0 CGGATGTTAAAACAGCAGCACAACCAACCACCCCCCTCCCTCCCTCCCCCCTCCTGCCTG 477 consensus_3770#2 CATACAA-AAAAAAACGCCTCCATCA-TCATCCCGTTTTTGAGTTTCCATCATTCACACG 282 consensus_3770#1 -GGCCGTTGGGACACGAACCGGTACGAACACTGCGACCACAACGAGCCTGTCGGCGATGG 416 * * * * ** * ** * consensus_3770#0 TACCAAAT-AACCGTATAAAACCCCGCGAGTCTCTGCAAGGAAGGGAAAAGAGGCAAACT 536 consensus_3770#2 CCTCATCTCGAATGTTTCGAATCTCGATTTTCTTTTTTTTTTACTAAGATCATTCATATT 342 consensus_3770#1 CAGCAGTC--ACCACCTTGACCGTCAATGGTAATCA----GCAGCAGCAGCAGC--AGCT 468 ** * * * * * * * * * consensus_3770#0 GACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCT-A 595 consensus_3770#2 TAGACAAACTACGAGCGCAACTAACAATTTTTTGGGGCGCGAAACAGGCAGAACGAAGGA 402 consensus_3770#1 GGTTAACCTGCCCGGCAGCTCGAACGGCGGTGATCAGCACAGTCCGCGGGCACCGTGCCA 528 * * * * * * * * ** * consensus_3770#0 GAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGA 655 consensus_3770#2 AAGTGAATAACATTTAGCATTATTACACATTATGAACTTATTGTGATTGTCCTG---TGA 459 consensus_3770#1 AGATCTGGACACGATAAACCTGTAAATCCGAGGTGATATCCCACCTTCGTCGAA-----A 583 * * * * * ** * consensus_3770#0 CCACGGCTT-TAGGGGAGAGTAAGATAA 682 consensus_3770#2 CTACATATT-TGATATATTACGAGAGCA 486 consensus_3770#1 CCAAAAATCACAACGAATAATCCACT-- 609 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||